Strain Fitness in Pseudomonas putida KT2440 around PP_3188

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,615,990	+		PP_3187	0.26	-4.0
3,615,991	-		PP_3187	0.26	-3.3
3,616,059	-		PP_3187	0.31	-0.9
3,616,097	+		PP_3187	0.34	-3.9
3,616,098	-		PP_3187	0.34	+0.5
3,616,182	+		PP_3187	0.41	+0.4
3,616,495	+		PP_3187	0.65	+1.1
3,616,527	+		PP_3187	0.68	+0.1
3,616,528	-		PP_3187	0.68	-3.5
3,616,732	-		PP_3187	0.84	+2.6
3,616,765	-		PP_3187	0.87	-4.4
3,616,765	-		PP_3187	0.87	-0.9
3,616,804	+		PP_3187	0.90	-0.6
3,616,812	+				-0.3
3,616,867	-				+1.0
3,616,951	-				+1.1
3,616,973	+				-4.8
3,617,027	+				-3.6
3,617,027	+				+0.2
3,617,028	-				-2.8
3,617,028	-				-4.1
3,617,079	+				-0.5
3,617,325	+		PP_3188	0.30	-4.1
3,617,637	+		PP_3188	0.56	+0.9
3,617,637	+		PP_3188	0.56	-3.3
3,617,638	-		PP_3188	0.57	-0.5
3,617,699	+		PP_3188	0.62	-1.9
3,617,699	+		PP_3188	0.62	-0.7
3,617,699	+		PP_3188	0.62	-2.7
3,617,700	-		PP_3188	0.62	-4.2
3,617,700	-		PP_3188	0.62	-1.1
3,617,700	-		PP_3188	0.62	-1.6
3,617,808	-		PP_3188	0.71	+0.2
3,617,833	-		PP_3188	0.73	-0.0
3,617,833	-		PP_3188	0.73	-4.1
3,617,833	-		PP_3188	0.73	+0.4
3,617,852	-		PP_3188	0.75	-3.6
3,617,944	+		PP_3188	0.83	-1.1
3,617,945	-		PP_3188	0.83	+0.5
3,618,111	+				+0.9
3,618,112	-				-1.0
3,618,143	+				-0.1
3,618,143	+				+0.4
3,618,144	-				-0.7
3,618,144	-				+0.2
3,618,365	+		PP_3189	0.17	-0.0
3,618,366	-		PP_3189	0.17	-4.5
3,618,622	-		PP_3189	0.38	+0.2
3,618,894	+		PP_3189	0.60	+0.2
3,618,894	+		PP_3189	0.60	+0.2
3,618,912	+		PP_3189	0.61	-1.2
3,618,913	-		PP_3189	0.61	-3.8
3,619,002	+		PP_3189	0.69	-0.1
3,619,095	+		PP_3189	0.76	-0.0
3,619,116	-		PP_3189	0.78	+0.8
3,619,116	-		PP_3189	0.78	+0.7