Strain Fitness in Pseudomonas putida KT2440 around PP_3156

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,574,647	+		PP_3155	0.67	+0.6
3,574,648	-		PP_3155	0.67	+0.1
3,574,697	+		PP_3155	0.70	+0.8
3,574,711	-		PP_3155	0.70	-2.9
3,574,711	-		PP_3155	0.70	+1.8
3,574,843	+		PP_3155	0.76	+0.4
3,574,843	+		PP_3155	0.76	+1.2
3,575,184	+				-0.0
3,575,351	+				+1.0
3,575,365	-				+0.1
3,575,556	+				+0.6
3,575,557	-				+0.3
3,575,557	-				-3.0
3,575,564	+				-0.0
3,575,564	+				-2.6
3,576,157	+		PP_3156	0.63	-0.4
3,576,158	-		PP_3156	0.63	+0.7
3,576,158	-		PP_3156	0.63	+1.7
3,576,205	+		PP_3156	0.68	+1.4
3,576,205	+		PP_3156	0.68	-3.6
3,576,206	-		PP_3156	0.68	+1.7
3,576,248	-		PP_3156	0.73	-4.1
3,576,248	-		PP_3156	0.73	+1.4
3,576,248	-		PP_3156	0.73	+0.1
3,576,381	+		PP_3156	0.88	+1.6
3,576,438	+				-0.8
3,576,541	-				-3.9
3,576,541	-				+0.3
3,576,555	+				+0.2
3,576,577	+				-0.6
3,576,578	-				+0.4
3,576,699	+		PP_3157	0.11	+0.5
3,577,174	-		PP_3157	0.71	-0.2
3,577,188	+		PP_3157	0.72	+0.1
3,577,188	+		PP_3157	0.72	+0.4
3,577,189	-		PP_3157	0.72	-4.1
3,577,189	-		PP_3157	0.72	+0.5
3,577,189	-		PP_3157	0.72	+1.4
3,577,189	-		PP_3157	0.72	+1.1
3,577,194	+		PP_3157	0.73	+1.6
3,577,194	+		PP_3157	0.73	-0.3
3,577,195	-		PP_3157	0.73	+0.3
3,577,195	-		PP_3157	0.73	+1.2
3,577,251	+		PP_3157	0.80	+0.6
3,577,251	+		PP_3157	0.80	+0.5
3,577,252	-		PP_3157	0.80	+1.1
3,577,258	+		PP_3157	0.81	-1.0
3,577,258	+		PP_3157	0.81	+1.0
3,577,259	-		PP_3157	0.81	+1.9
3,577,259	-		PP_3157	0.81	-3.5
3,577,259	-		PP_3157	0.81	+0.7