Strain Fitness in Pseudomonas putida KT2440 around PP_3153

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,571,106	-		PP_3152	0.15	+2.0
3,571,106	-		PP_3152	0.15	+0.8
3,571,302	+		PP_3152	0.38	-0.9
3,571,303	-		PP_3152	0.38	-3.4
3,571,303	-		PP_3152	0.38	+2.0
3,571,438	+		PP_3152	0.54	+1.1
3,571,439	-		PP_3152	0.54	+1.6
3,571,484	+		PP_3152	0.59	+0.4
3,571,485	-		PP_3152	0.59	-0.8
3,571,485	-		PP_3152	0.59	-0.4
3,571,485	-		PP_3152	0.59	+0.7
3,571,485	-		PP_3152	0.59	+0.4
3,571,485	-		PP_3152	0.59	-0.2
3,571,527	+		PP_3152	0.64	+1.7
3,571,528	-		PP_3152	0.64	-5.0
3,571,528	-		PP_3152	0.64	+0.7
3,571,624	-		PP_3152	0.75	-0.4
3,571,747	-		PP_3152	0.89	-0.0
3,571,765	+				+0.7
3,571,778	+				-1.8
3,571,779	-				+1.0
3,571,779	-				+0.6
3,571,929	+				+0.4
3,571,929	+				-3.9
3,571,929	+				+1.5
3,571,930	-				+1.0
3,571,930	-				-1.1
3,571,932	+				-1.5
3,571,932	+				-2.2
3,571,932	+				+3.0
3,571,932	+				-3.4
3,571,933	-				-2.2
3,571,933	-				-2.4
3,571,933	-				+1.0
3,571,933	-				-0.7
3,571,933	-				+0.7
3,571,961	+				+1.0
3,571,962	-				+0.1
3,571,962	-				+1.0
3,571,980	+				+0.5
3,571,981	-				+1.1
3,571,981	-				+0.2
3,572,179	+		PP_3153	0.48	-1.7
3,572,179	+		PP_3153	0.48	-1.3
3,572,179	+		PP_3153	0.48	-0.2
3,572,179	+		PP_3153	0.48	-0.4
3,572,179	+		PP_3153	0.48	-2.9
3,572,180	-		PP_3153	0.48	-1.0
3,572,257	+		PP_3153	0.66	+0.1
3,572,257	+		PP_3153	0.66	-1.7
3,572,258	-		PP_3153	0.66	+0.2
3,572,289	+		PP_3153	0.73	+0.2
3,572,289	+		PP_3153	0.73	-2.6
3,572,289	+		PP_3153	0.73	-3.8
3,572,290	-		PP_3153	0.73	+0.5
3,572,290	-		PP_3153	0.73	-1.2
3,572,314	-		PP_3153	0.79	+0.4
3,572,314	-		PP_3153	0.79	-0.9
3,572,396	+				-0.8
3,572,507	-				-1.1
3,572,513	+				+1.0
3,572,513	+				+0.5
3,572,513	+				+1.1
3,572,522	+				-1.0
3,572,569	-				+0.7
3,572,576	-				-1.1
3,572,675	+				-4.3
3,572,675	+				-3.8
3,572,694	-				+1.2
3,572,782	+		PP_3154	0.23	-1.0
3,572,782	+		PP_3154	0.23	+0.8
3,572,782	+		PP_3154	0.23	+0.2
3,572,783	-		PP_3154	0.23	+1.1
3,572,783	-		PP_3154	0.23	+0.7
3,572,867	-		PP_3154	0.39	-0.4
3,572,867	-		PP_3154	0.39	-3.7
3,572,867	-		PP_3154	0.39	-0.3
3,572,867	-		PP_3154	0.39	+0.5
3,572,867	-		PP_3154	0.39	+0.1
3,572,867	-				+0.3
3,572,872	+		PP_3154	0.40	+1.5
3,572,872	+		PP_3154	0.40	+0.1
3,572,872	+		PP_3154	0.40	-0.8
3,572,932	+		PP_3154	0.52	+1.1
3,572,932	+		PP_3154	0.52	-0.3
3,572,933	-		PP_3154	0.52	+1.1
3,572,933	-		PP_3154	0.52	-1.5
3,572,950	-		PP_3154	0.55	+0.2
3,572,950	-		PP_3154	0.55	+1.8
3,572,950	-		PP_3154	0.55	+0.6
3,572,954	-		PP_3154	0.56	-0.5
3,572,954	-		PP_3154	0.56	+0.5
3,572,962	+		PP_3154	0.57	-0.4
3,572,962	+		PP_3154	0.57	-0.6
3,572,963	-		PP_3154	0.58	+1.9
3,572,963	-		PP_3154	0.58	-1.2
3,572,963	-		PP_3154	0.58	+1.2
3,572,963	-		PP_3154	0.58	+1.4
3,572,977	-		PP_3154	0.60	+1.2
3,573,051	+		PP_3154	0.75	+1.6
3,573,090	-		PP_3154	0.82	+0.4
3,573,109	+		PP_3154	0.86	-0.4
3,573,109	+		PP_3154	0.86	-0.4
3,573,110	-		PP_3154	0.86	-4.0
3,573,146	+				+0.3
3,573,146	+				+1.6
3,573,146	+				+0.8
3,573,146	+				-0.4
3,573,166	+				+0.1
3,573,167	-				+0.1
3,573,167	-				-4.9
3,573,223	+				+1.1
3,573,224	-				+0.5
3,573,225	+				+1.2
3,573,226	-				+0.4
3,573,266	+				-0.4
3,573,266	+				+0.9
3,573,266	+				-1.4
3,573,266	+				-0.5
3,573,266	+				+0.6
3,573,266	+				+0.0
3,573,266	+				+0.4
3,573,266	+				+1.1
3,573,267	-				+1.2
3,573,267	-				-0.4
3,573,267	-				+0.6
3,573,267	-				-0.4
3,573,267	-				-1.4
3,573,267	-				+0.4
3,573,267	-				+1.4
3,573,267	-				+1.1
3,573,267	-				-1.2
3,573,270	+				+1.3
3,573,270	+				+0.1
3,573,270	+				-2.5
3,573,270	+				+0.8
3,573,270	+				-0.0
3,573,270	+				-0.9
3,573,270	+				-0.3
3,573,270	+				+0.8
3,573,270	+				-3.7
3,573,270	+				-3.4
3,573,270	+				+1.5
3,573,270	+				+0.1
3,573,270	+				+0.5
3,573,270	+				-4.0
3,573,271	-				-0.1
3,573,271	-				-0.0
3,573,271	-				-0.6
3,573,271	-				-0.5
3,573,271	-				-0.2
3,573,271	-				+0.3
3,573,271	-				-0.8
3,573,271	-				-0.6
3,573,271	-				+0.2
3,573,271	-				+1.0
3,573,271	-				+1.6
3,573,271	-				+3.7
3,573,271	-				+1.0
3,573,354	+				-3.7
3,573,354	+				-1.0
3,573,354	+				-1.7
3,573,354	+				-2.2
3,573,355	-				+0.7
3,573,382	-				+0.5
3,573,396	+				-3.2
3,573,396	+				+1.8
3,573,396	+				+0.2
3,573,396	+				+1.5
3,573,396	+				-3.0
3,573,397	-				-3.9