Strain Fitness in Pseudomonas putida KT2440 around PP_3060

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,439,299	-		PP_3059	0.19	+0.3
3,439,617	-		PP_3059	0.46	+0.2
3,439,617	-		PP_3059	0.46	-1.4
3,439,617	-		PP_3059	0.46	+0.2
3,439,617	-		PP_3059	0.46	+1.6
3,439,724	+		PP_3059	0.55	+0.8
3,439,843	+		PP_3059	0.65	-0.1
3,440,009	+		PP_3059	0.80	-4.7
3,440,009	+		PP_3059	0.80	+0.2
3,440,010	-		PP_3059	0.80	+0.8
3,440,090	+		PP_3059	0.87	+0.4
3,440,142	-				-2.2
3,440,142	-				+0.2
3,440,243	+				-0.2
3,440,244	-				+0.2
3,440,372	+		PP_3060	0.22	+0.1
3,440,372	+		PP_3060	0.22	-0.5
3,440,373	-		PP_3060	0.23	-1.2
3,440,392	+		PP_3060	0.26	+0.2
3,440,652	-		PP_3060	0.77	+0.1
3,440,652	-		PP_3060	0.77	-0.5
3,440,654	+		PP_3060	0.78	-1.6
3,440,655	-		PP_3060	0.78	-4.2
3,440,685	-		PP_3060	0.84	-2.6
3,440,685	-		PP_3060	0.84	-0.6
3,440,685	-		PP_3060	0.84	+1.4
3,440,685	-		PP_3060	0.84	-1.1
3,440,766	-				+1.3
3,441,047	+		PP_3061	0.79	+0.6
3,441,047	+		PP_3061	0.79	+0.7
3,441,047	+		PP_3061	0.79	-2.5
3,441,056	+		PP_3061	0.82	-4.1
3,441,056	+		PP_3061	0.82	+1.3
3,441,056	+		PP_3061	0.82	+1.0
3,441,057	-		PP_3061	0.82	+0.8
3,441,107	+				-2.4
3,441,107	+				-5.2
3,441,107	+				-4.0
3,441,108	-				-1.1
3,441,264	-				-2.1
3,441,680	+		PP_3062	0.13	+1.2
3,441,718	+		PP_3062	0.15	-3.5
3,441,748	+		PP_3062	0.15	+1.3
3,441,748	+		PP_3062	0.15	+0.8