Strain Fitness in Pseudomonas putida KT2440 around PP_2976

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,375,625	+		PP_2974	0.72	-0.3
3,375,625	+		PP_2974	0.72	+0.4
3,375,625	+		PP_2974	0.72	+1.5
3,375,650	+		PP_2974	0.73	+1.0
3,375,650	+		PP_2974	0.73	-0.1
3,375,650	+		PP_2974	0.73	-0.0
3,375,651	-		PP_2974	0.73	+2.1
3,375,651	-		PP_2974	0.73	-1.2
3,375,656	+		PP_2974	0.74	-3.8
3,375,731	-		PP_2974	0.78	+3.3
3,375,753	+		PP_2974	0.79	+0.2
3,375,754	-		PP_2974	0.79	+1.2
3,375,787	+		PP_2974	0.81	-2.8
3,375,787	+		PP_2974	0.81	-4.4
3,375,842	+		PP_2974	0.85	+0.3
3,375,842	+		PP_2974	0.85	-4.3
3,375,842	+		PP_2974	0.85	+0.6
3,375,843	-		PP_2974	0.85	-0.2
3,375,843	-		PP_2974	0.85	-2.4
3,375,843	-		PP_2974	0.85	-3.3
3,375,949	+				+1.9
3,375,949	+				+0.8
3,375,950	-				+1.1
3,375,998	-				-4.1
3,376,007	+				+1.9
3,376,008	-				+0.2
3,376,023	+				+0.8
3,376,023	+				-2.4
3,376,069	-				+1.0
3,376,092	-				+0.4
3,376,124	-				-2.2
3,376,137	-				-0.4
3,376,273	+		PP_2975	0.43	+0.1
3,376,273	+		PP_2975	0.43	-0.8
3,376,273	+		PP_2975	0.43	+0.1
3,376,273	+		PP_2975	0.43	+0.4
3,376,273	+		PP_2975	0.43	-0.1
3,376,273	+		PP_2975	0.43	+0.0
3,376,274	-		PP_2975	0.43	-0.8
3,376,274	-		PP_2975	0.43	-0.4
3,376,366	+		PP_2975	0.78	-2.1
3,376,367	-		PP_2975	0.78	+1.7
3,376,367	-		PP_2975	0.78	+0.6
3,376,367	-		PP_2975	0.78	-4.4
3,376,424	-				-0.7
3,376,490	-				-0.4
3,376,573	-				-0.3
3,376,623	+		PP_2976	0.16	+0.7
3,376,630	+		PP_2976	0.18	-0.0
3,376,987	+		PP_2977	0.12	+0.5
3,376,988	-		PP_2977	0.12	+0.6
3,377,070	+		PP_2977	0.21	+0.0
3,377,180	-		PP_2977	0.33	+2.5
3,377,328	+		PP_2977	0.49	+1.2
3,377,328	+		PP_2977	0.49	+0.7
3,377,329	-		PP_2977	0.49	-0.1
3,377,329	-		PP_2977	0.49	-0.8
3,377,364	-		PP_2977	0.53	+1.1
3,377,364	-		PP_2977	0.53	+0.8
3,377,490	+		PP_2977	0.67	+0.5
3,377,491	-		PP_2977	0.67	-4.6
3,377,491	-		PP_2977	0.67	+0.5
3,377,566	-		PP_2977	0.76	+0.1
3,377,566	-		PP_2977	0.76	+0.3
3,377,601	+		PP_2977	0.79	-3.9
3,377,601	+		PP_2977	0.79	+0.1
3,377,602	-		PP_2977	0.80	+0.7
3,377,602	-		PP_2977	0.80	+1.1
3,377,602	-		PP_2977	0.80	+0.4
3,377,602	-		PP_2977	0.80	+0.7
3,377,622	-		PP_2977	0.82	-5.5
3,377,716	+				-1.6
3,377,720	+				+1.0
3,377,746	+				-2.1
3,377,746	+				+0.7
3,377,747	-				-0.2
3,377,747	-				-0.3
3,377,748	+				-4.2
3,377,748	+				-3.6
3,377,749	-				+1.0
3,377,749	-				-4.0
3,377,749	-				-5.0
3,377,749	-				+0.3
3,377,829	-				+0.9
3,377,829	-				-0.0
3,377,836	+				+0.3
3,377,837	-				-4.6
3,377,844	-				+0.6
3,377,877	-				+1.5
3,377,877	-				-4.5