Strain Fitness in Pseudomonas putida KT2440 around PP_2957

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,360,395	+		PP_2956	0.45	+1.7
3,360,395	+		PP_2956	0.45	+0.9
3,360,396	-		PP_2956	0.45	-0.2
3,360,396	-		PP_2956	0.45	-0.0
3,360,396	-		PP_2956	0.45	+0.1
3,360,396	-		PP_2956	0.45	+2.1
3,360,399	+		PP_2956	0.45	-0.4
3,360,399	+		PP_2956	0.45	+0.9
3,360,399	+		PP_2956	0.45	-0.2
3,360,399	+		PP_2956	0.45	-4.7
3,360,399	+		PP_2956	0.45	-1.5
3,360,400	-		PP_2956	0.45	+1.9
3,360,400	-		PP_2956	0.45	-0.0
3,360,400	-		PP_2956	0.45	+0.6
3,360,400	-		PP_2956	0.45	-4.6
3,360,400	-		PP_2956	0.45	+1.5
3,360,461	+		PP_2956	0.49	-1.1
3,360,461	+		PP_2956	0.49	-0.1
3,360,461	+		PP_2956	0.49	+0.9
3,360,462	-				+2.1
3,360,462	-		PP_2956	0.49	-4.1
3,360,462	-				+2.8
3,360,484	+		PP_2956	0.50	+1.4
3,360,485	-		PP_2956	0.51	-4.2
3,360,505	-		PP_2956	0.52	-0.8
3,360,505	-		PP_2956	0.52	-0.4
3,360,662	+		PP_2956	0.62	-2.7
3,360,663	-		PP_2956	0.62	+0.1
3,360,724	-		PP_2956	0.66	-0.8
3,360,824	+		PP_2956	0.72	-4.2
3,360,918	-		PP_2956	0.78	-2.0
3,360,918	-		PP_2956	0.78	+2.3
3,360,918	-		PP_2956	0.78	-3.3
3,360,918	-		PP_2956	0.78	+0.9
3,361,001	+		PP_2956	0.83	+0.3
3,361,002	-		PP_2956	0.83	+0.7
3,361,002	-		PP_2956	0.83	-3.5
3,361,002	-		PP_2956	0.83	+0.3
3,361,002	-		PP_2956	0.83	+0.0
3,361,005	-		PP_2956	0.83	-4.2
3,361,005	-		PP_2956	0.83	+0.8
3,361,019	+		PP_2956	0.84	+0.4
3,361,020	-				-1.0
3,361,020	-		PP_2956	0.84	+0.5
3,361,020	-		PP_2956	0.84	-2.2
3,361,020	-		PP_2956	0.84	+0.9
3,361,020	-		PP_2956	0.84	+0.5
3,361,025	+		PP_2956	0.85	-0.2
3,361,025	+		PP_2956	0.85	-0.4
3,361,045	+				+0.8
3,361,086	-		PP_2956	0.89	-2.4
3,361,086	-		PP_2956	0.89	-0.5
3,361,122	-				-1.7
3,361,183	-				-0.2
3,361,207	+				+0.9
3,361,208	-				+0.6
3,361,270	+				-3.3
3,361,270	+				-0.9
3,361,271	-				-0.6
3,361,305	-				+0.7
3,361,305	-				-0.2
3,361,339	-				+1.6
3,361,349	+				-3.9
3,361,350	-				+0.9
3,361,495	+		PP_2957	0.12	+1.0
3,361,495	+		PP_2957	0.12	-1.6
3,361,496	-		PP_2957	0.12	+1.9
3,361,496	-		PP_2957	0.12	+0.4
3,361,588	-		PP_2957	0.21	+0.1
3,361,660	+		PP_2957	0.27	-3.8
3,361,661	-		PP_2957	0.27	+0.2
3,361,661	-		PP_2957	0.27	+0.3
3,361,718	+		PP_2957	0.33	+0.2
3,361,718	+		PP_2957	0.33	-0.0
3,361,733	+		PP_2957	0.34	-1.5
3,361,734	-		PP_2957	0.34	-0.8
3,361,761	-		PP_2957	0.37	+0.0
3,361,761	-		PP_2957	0.37	-0.2
3,361,763	+		PP_2957	0.37	-1.3
3,361,764	-		PP_2957	0.37	-0.8
3,361,764	-		PP_2957	0.37	+0.0
3,361,841	+		PP_2957	0.44	+0.3
3,361,841	+		PP_2957	0.44	+0.9
3,361,844	+		PP_2957	0.44	-0.7
3,361,845	-		PP_2957	0.44	-4.4
3,362,113	-		PP_2957	0.69	+1.1
3,362,237	-		PP_2957	0.80	-2.8
3,362,309	+		PP_2957	0.87	-0.4
3,362,310	-		PP_2957	0.87	-1.0
3,362,377	-				-0.0
3,362,474	+				-0.2
3,362,475	-				-0.5
3,362,475	-				+0.7
3,362,478	+				-4.0
3,362,479	-				+1.1
3,362,479	-				-0.5
3,362,506	+				+2.4
3,362,506	+				+1.1
3,362,506	+				+1.0
3,362,507	-				+0.4
3,362,507	-				-4.0
3,362,507	-				+1.3
3,362,634	+		PP_2958	0.34	+0.0
3,362,634	+		PP_2958	0.34	-0.9
3,362,634	+		PP_2958	0.34	+0.4
3,362,635	-		PP_2958	0.35	+0.7
3,362,761	+		PP_2958	0.84	+1.4
3,362,780	+				-0.8
3,362,780	+				-1.5
3,362,781	-				-2.8
3,362,781	-				+0.3
3,362,781	-				+1.0
3,362,782	+				+0.5
3,362,782	+				+0.1
3,362,782	+				+0.7
3,362,782	+				-3.4
3,362,782	+				-0.2
3,362,782	+				-0.3
3,362,783	-				-0.4
3,362,783	-				-3.5
3,362,783	-				-0.1
3,362,783	-				+0.8
3,362,783	-				+1.3
3,362,783	-				-0.2
3,362,786	+				+0.2
3,362,786	+				-1.3
3,362,786	+				+0.3
3,362,787	-				-2.2
3,362,787	-				+1.8
3,362,808	+				-1.2
3,362,817	-				-2.0
3,362,867	+		PP_2959	0.10	-3.9
3,362,868	-		PP_2959	0.10	+0.5
3,362,920	-		PP_2959	0.20	-3.9
3,362,925	+		PP_2959	0.21	-0.4
3,362,926	-		PP_2959	0.21	-3.1
3,363,168	+		PP_2959	0.68	-0.3
3,363,168	+		PP_2959	0.68	-2.4
3,363,169	-		PP_2959	0.68	-5.1
3,363,322	-				-1.5
3,363,324	+				-1.1
3,363,325	-				+0.7
3,363,348	-				-0.8
3,363,369	+				-0.2
3,363,387	+				-0.7
3,363,387	+				-0.0
3,363,387	+				-0.0
3,363,387	+				-4.1
3,363,387	+				+0.7
3,363,387	+				-3.9
3,363,388	-				-0.2
3,363,388	-				-3.4
3,363,388	-				+0.1
3,363,390	+				-0.1
3,363,390	+				-0.8
3,363,391	-				-0.5
3,363,391	-				-4.3
3,363,431	+				+1.3
3,363,431	+				-4.0
3,363,432	-				-0.3
3,363,432	-				+0.4
3,363,432	-				+1.5