Strain Fitness in Pseudomonas putida KT2440 around PP_2937

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,340,109	+		PP_2936	0.55	+0.8
3,340,109	+		PP_2936	0.55	+0.7
3,340,109	+		PP_2936	0.55	-0.2
3,340,110	-		PP_2936	0.55	-4.1
3,340,110	-		PP_2936	0.55	+0.6
3,340,110	-		PP_2936	0.55	-0.2
3,340,118	+		PP_2936	0.55	-4.4
3,340,118	+		PP_2936	0.55	-4.7
3,340,119	-		PP_2936	0.55	+0.4
3,340,119	-		PP_2936	0.55	+2.4
3,340,149	-		PP_2936	0.57	-4.1
3,340,224	+		PP_2936	0.62	-1.2
3,340,443	-		PP_2936	0.76	+0.6
3,340,443	-		PP_2936	0.76	-0.3
3,340,520	+		PP_2936	0.81	-4.7
3,340,524	+		PP_2936	0.81	-0.6
3,340,524	+		PP_2936	0.81	-4.2
3,340,525	-		PP_2936	0.81	-1.2
3,340,525	-		PP_2936	0.81	-0.1
3,340,601	+		PP_2936	0.86	+0.5
3,340,818	+				-4.4
3,340,857	+				-0.9
3,340,858	-				+0.1
3,340,861	+				+1.3
3,340,963	+		PP_2937	0.25	-3.9
3,340,964	-		PP_2937	0.25	+0.6
3,340,964	-		PP_2937	0.25	+0.8
3,340,967	+		PP_2937	0.25	+0.9
3,340,968	-		PP_2937	0.26	+0.2
3,340,968	-		PP_2937	0.26	+3.6
3,341,040	+				-0.2
3,341,040	+		PP_2937	0.43	-4.4
3,341,041	-		PP_2937	0.43	-4.1
3,341,051	-		PP_2937	0.45	-2.8
3,341,068	+		PP_2937	0.50	+1.2
3,341,069	-		PP_2937	0.50	-2.3
3,341,069	-		PP_2937	0.50	+1.4
3,341,126	+		PP_2937	0.63	+2.0
3,341,127	-		PP_2937	0.64	+1.6
3,341,163	-		PP_2937	0.72	+1.7
3,341,163	-		PP_2937	0.72	-3.1
3,341,268	+				-2.4
3,341,345	-				-0.2
3,341,395	+				-0.7
3,341,395	+				-1.5
3,341,395	+				+0.3
3,341,396	-				-3.0
3,341,456	+				-0.4
3,341,456	+				-0.5
3,341,457	-				+1.6
3,341,457	-				-0.7
3,341,514	+				-0.4
3,341,581	-		PP_2938	0.18	+0.8
3,341,670	-		PP_2938	0.31	-1.1
3,341,711	+		PP_2938	0.37	+1.5
3,341,711	+		PP_2938	0.37	+1.1
3,341,712	-		PP_2938	0.37	+2.0
3,341,712	-		PP_2938	0.37	-1.0
3,341,712	-		PP_2938	0.37	+1.2
3,341,712	-		PP_2938	0.37	+2.0
3,341,811	+		PP_2938	0.52	-0.1
3,341,811	+		PP_2938	0.52	-2.3
3,341,812	-				+0.5
3,341,812	-		PP_2938	0.52	+0.6
3,341,812	-		PP_2938	0.52	+0.8
3,341,886	+		PP_2938	0.63	-0.2
3,341,886	+		PP_2938	0.63	-0.0
3,341,887	-		PP_2938	0.63	+2.8
3,341,887	-		PP_2938	0.63	-2.8
3,341,887	-		PP_2938	0.63	+0.8
3,341,887	-		PP_2938	0.63	-0.2
3,341,887	-		PP_2938	0.63	-2.6
3,341,913	-		PP_2938	0.67	+1.5
3,341,913	-		PP_2938	0.67	+0.7
3,341,986	-				+0.2
3,342,021	+		PP_2938	0.82	-0.8
3,342,021	+		PP_2938	0.82	-1.4
3,342,021	+		PP_2938	0.82	-0.2
3,342,022	-		PP_2938	0.83	+0.2
3,342,022	-		PP_2938	0.83	-1.5
3,342,022	-		PP_2938	0.83	+0.1
3,342,226	+				+1.8
3,342,226	+				-1.2
3,342,226	+				-0.5
3,342,227	-				+2.3
3,342,227	-				-0.4