Strain Fitness in Pseudomonas putida KT2440 around PP_2823

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,220,053	+		PP_5539	0.17	-4.4
3,220,053	+		PP_5539	0.17	-1.2
3,220,065	+		PP_5539	0.18	-3.9
3,220,110	+		PP_5539	0.22	-4.0
3,220,110	+		PP_5539	0.22	+1.2
3,220,111	-		PP_5539	0.22	+1.1
3,220,114	+		PP_5539	0.23	+2.0
3,220,115	-		PP_5539	0.23	-4.3
3,220,115	-		PP_5539	0.23	+2.3
3,220,158	+		PP_5539	0.26	-0.6
3,220,159	-		PP_5539	0.27	-0.3
3,220,159	-		PP_5539	0.27	-2.2
3,220,159	-		PP_5539	0.27	+0.3
3,220,243	-		PP_5539	0.34	+1.0
3,220,395	+		PP_5539	0.47	+1.4
3,220,446	+		PP_5539	0.51	-3.0
3,220,536	+		PP_5539	0.59	+0.5
3,220,536	+		PP_5539	0.59	-3.5
3,220,536	+		PP_5539	0.59	-0.4
3,220,557	+		PP_5539	0.61	+0.6
3,220,558	-		PP_5539	0.61	-0.4
3,220,581	+		PP_5539	0.63	-2.1
3,220,641	+		PP_5539	0.68	-0.5
3,220,641	+		PP_5539	0.68	-0.3
3,220,647	+		PP_5539	0.69	+0.3
3,220,648	-		PP_5539	0.69	-1.0
3,220,648	-		PP_5539	0.69	-3.6
3,220,648	-		PP_5539	0.69	-0.1
3,220,648	-		PP_5539	0.69	-1.8
3,220,710	+		PP_5539	0.74	-1.3
3,220,710	+		PP_5539	0.74	-1.9
3,220,710	+		PP_5539	0.74	-0.3
3,220,711	-		PP_5539	0.74	-3.1
3,221,230	+		PP_2823	0.11	+1.3
3,221,652	+		PP_2823	0.37	+1.0
3,221,736	+		PP_2823	0.42	+1.3
3,221,736	+		PP_2823	0.42	+0.5
3,221,736	+		PP_2823	0.42	-4.0
3,221,737	-		PP_2823	0.42	-3.8
3,221,737	-		PP_2823	0.42	+0.4
3,221,737	-				-1.1
3,221,752	+		PP_2823	0.43	-4.8
3,221,753	-		PP_2823	0.43	+0.4
3,221,753	-		PP_2823	0.43	-0.0
3,222,095	+		PP_2823	0.64	+0.1
3,222,161	+		PP_2823	0.68	-2.9
3,222,239	-		PP_2823	0.72	-0.8
3,222,579	-				-3.8
3,222,785	+				-0.5
3,222,786	-				-2.4
3,222,797	-				+1.6
3,222,987	-				+0.9
3,223,024	-				-0.9
3,223,066	+				-1.7
3,223,067	-				+0.0
3,223,067	-				-2.4
3,223,067	-				-3.9
3,223,067	-				+0.9
3,223,254	+				+1.0
3,223,482	+		PP_2824	0.34	-4.7
3,223,600	+		PP_2824	0.51	-2.9
3,223,601	-		PP_2824	0.51	+0.2