Strain Fitness in Pseudomonas putida KT2440 around PP_2800

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,189,775	+		PP_2799	0.37	+1.2
3,189,776	-		PP_2799	0.37	+2.1
3,189,776	-		PP_2799	0.37	+0.9
3,189,827	-		PP_2799	0.40	-0.2
3,189,934	+		PP_2799	0.48	-4.0
3,190,023	-		PP_2799	0.55	-2.0
3,190,023	-		PP_2799	0.55	-2.5
3,190,024	+		PP_2799	0.55	-2.0
3,190,024	+		PP_2799	0.55	-3.5
3,190,024	+		PP_2799	0.55	-0.5
3,190,025	-		PP_2799	0.55	-0.1
3,190,025	-		PP_2799	0.55	-0.4
3,190,025	-		PP_2799	0.55	-0.5
3,190,056	-		PP_2799	0.57	+1.3
3,190,056	-		PP_2799	0.57	-0.0
3,190,201	+		PP_2799	0.67	-0.9
3,190,405	+		PP_2799	0.82	+0.7
3,190,405	+		PP_2799	0.82	+0.6
3,190,408	+		PP_2799	0.82	+1.4
3,191,478	+		PP_2800	0.58	-4.1
3,191,494	-		PP_2800	0.60	-1.7
3,191,583	+		PP_2800	0.67	-3.7
3,191,592	+		PP_2800	0.68	-4.5
3,191,691	+		PP_2800	0.75	+0.5
3,191,841	+		PP_2800	0.87	-2.7
3,191,841	+		PP_2800	0.87	-1.2
3,191,842	-		PP_2800	0.87	-4.1
3,191,878	-				-0.0
3,192,003	-				+2.0
3,192,070	+				+0.4
3,192,085	+				+0.3
3,192,086	-				+0.8
3,192,086	-				-0.3
3,192,429	+		PP_2801	0.28	-3.5
3,192,429	+		PP_2801	0.28	-4.4
3,192,429	+		PP_2801	0.28	+0.5
3,192,430	-		PP_2801	0.28	+0.3
3,192,430	-		PP_2801	0.28	+0.8
3,192,430	-		PP_2801	0.28	+0.9
3,192,430	-		PP_2801	0.28	+0.5
3,192,431	+		PP_2801	0.28	-2.9
3,192,431	+		PP_2801	0.28	-0.7
3,192,601	+		PP_2801	0.40	-3.2
3,192,602	-		PP_2801	0.40	-1.1
3,192,602	-		PP_2801	0.40	-0.9
3,192,641	-		PP_2801	0.42	-5.3
3,192,728	+		PP_2801	0.49	-1.4
3,192,728	+		PP_2801	0.49	+0.8
3,192,729	-		PP_2801	0.49	-3.3
3,192,741	-		PP_2801	0.49	+0.3
3,192,784	-		PP_2801	0.52	+0.3
3,192,784	-		PP_2801	0.52	-1.4