Strain Fitness in Pseudomonas putida KT2440 around PP_2778

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,162,290	-				-2.5
3,162,295	-				+0.2
3,162,295	-				+0.9
3,162,389	+				+0.2
3,162,425	-				+0.7
3,162,539	-				+1.7
3,162,556	+				+3.0
3,162,597	+				+2.6
3,162,598	-				+0.0
3,162,619	+				-4.3
3,162,671	+				-0.5
3,162,671	+				+0.2
3,162,672	-				-0.9
3,162,672	-				-2.9
3,162,681	-				+2.0
3,162,708	-		PP_2777	0.13	-2.3
3,162,734	+		PP_2777	0.18	+0.7
3,162,735	-		PP_2777	0.18	-1.3
3,162,801	+		PP_2777	0.29	-0.9
3,162,933	+				-0.4
3,162,934	-		PP_2777	0.53	+0.3
3,162,998	+		PP_2777	0.64	-0.1
3,162,999	-		PP_2777	0.64	+0.5
3,163,032	+		PP_2777	0.70	+1.5
3,163,032	+		PP_2777	0.70	+0.6
3,163,372	+		PP_2778	0.13	-1.8
3,163,458	-		PP_2778	0.19	-4.7
3,163,458	-		PP_2778	0.19	-3.7
3,163,548	-		PP_2778	0.26	+0.7
3,163,584	-		PP_2778	0.29	-2.2
3,163,704	+		PP_2778	0.39	+0.7
3,163,705	-		PP_2778	0.39	-4.2
3,163,714	+		PP_2778	0.39	+2.0
3,163,715	-		PP_2778	0.39	+0.2
3,163,844	+		PP_2778	0.50	-0.1
3,163,847	+		PP_2778	0.50	-4.0
3,163,848	-		PP_2778	0.50	-0.7
3,164,087	+		PP_2778	0.69	-4.8
3,164,087	+		PP_2778	0.69	-0.6
3,164,164	+		PP_2778	0.75	+0.3
3,164,165	-		PP_2778	0.75	-0.1
3,164,517	+				-0.1
3,164,517	+				+0.1
3,164,518	-				+0.4
3,164,661	+		PP_2779	0.16	-5.2
3,164,662	-		PP_2779	0.16	-4.1
3,164,662	-		PP_2779	0.16	+0.7
3,165,063	-		PP_2779	0.53	-3.4
3,165,091	-		PP_2779	0.55	+0.5
3,165,206	+		PP_2779	0.66	+1.6
3,165,207	-		PP_2779	0.66	-0.8
3,165,365	+		PP_2779	0.81	+0.4
3,165,365	+		PP_2779	0.81	+0.4
3,165,406	+		PP_2779	0.85	-0.3
3,165,407	-		PP_2779	0.85	-4.6