Strain Fitness in Pseudomonas putida KT2440 around PP_2660

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,046,260	-				-4.1
3,046,260	-				-1.1
3,046,260	-				+0.3
3,046,312	+				-0.7
3,046,312	+				+1.9
3,046,313	-				+1.6
3,046,342	+				-0.8
3,046,342	+				+0.8
3,046,419	+		PP_2659	0.12	-1.1
3,046,420	-		PP_2659	0.13	-1.2
3,046,424	+		PP_2659	0.13	-3.4
3,046,536	-		PP_2659	0.26	-3.2
3,046,536	-		PP_2659	0.26	+1.5
3,046,599	+				+0.8
3,046,624	+		PP_2659	0.37	-0.1
3,046,624	+		PP_2659	0.37	+1.7
3,046,625	-		PP_2659	0.37	+1.1
3,046,635	+		PP_2659	0.38	+2.2
3,046,635	+		PP_2659	0.38	+1.7
3,046,636	-		PP_2659	0.38	-0.5
3,046,636	-		PP_2659	0.38	+2.1
3,046,962	+		PP_2659	0.77	+0.6
3,046,963	-		PP_2659	0.77	+1.4
3,046,963	-		PP_2659	0.77	-0.9
3,046,986	-		PP_2659	0.80	+1.5
3,047,040	-		PP_2659	0.86	-3.6
3,047,065	-		PP_2659	0.89	-0.4
3,047,215	+				-3.0
3,047,225	+				-0.3
3,047,243	+				-3.6
3,047,244	-				-3.6
3,047,393	-		PP_2660	0.21	-2.7
3,047,393	-		PP_2660	0.21	+0.7
3,047,410	+		PP_2660	0.23	+0.9
3,047,410	+		PP_2660	0.23	+1.5
3,047,410	+		PP_2660	0.23	+0.9
3,047,411	-		PP_2660	0.23	+1.2
3,047,484	-		PP_2660	0.34	-1.0
3,047,484	-		PP_2660	0.34	+1.8
3,047,484	-		PP_2660	0.34	+2.5
3,047,584	+		PP_2660	0.48	+1.2
3,047,584	+		PP_2660	0.48	+0.5
3,047,593	+		PP_2660	0.49	+1.7
3,047,641	+		PP_2660	0.56	+0.7
3,047,641	+				-1.3
3,047,641	+		PP_2660	0.56	-0.0
3,047,641	+		PP_2660	0.56	+0.5
3,047,642	-		PP_2660	0.56	-3.1
3,047,642	-		PP_2660	0.56	+1.9
3,047,642	-		PP_2660	0.56	+0.1
3,047,642	-		PP_2660	0.56	+1.4
3,047,642	-		PP_2660	0.56	+0.9
3,047,642	-		PP_2660	0.56	+1.2
3,047,645	+		PP_2660	0.57	+0.4
3,047,645	+		PP_2660	0.57	-3.4
3,047,645	+		PP_2660	0.57	+0.6
3,047,645	+		PP_2660	0.57	+1.7
3,047,646	-		PP_2660	0.57	+0.5
3,047,703	+		PP_2660	0.65	+1.0
3,047,704	-		PP_2660	0.65	+1.9
3,047,704	-		PP_2660	0.65	-4.4
3,047,714	-		PP_2660	0.67	-0.2
3,047,773	+		PP_2660	0.75	+0.0
3,047,795	+		PP_2660	0.78	-0.3
3,047,796	-		PP_2660	0.78	+0.6
3,047,830	+		PP_2660	0.83	-4.7
3,048,183	+		PP_2661	0.40	+0.3
3,048,184	-		PP_2661	0.40	+0.3
3,048,184	-		PP_2661	0.40	+0.3
3,048,353	-		PP_2661	0.68	-4.7
3,048,353	-		PP_2661	0.68	+0.5
3,048,353	-		PP_2661	0.68	-0.2
3,048,353	-		PP_2661	0.68	-2.3
3,048,567	+				+0.8
3,048,567	+				-5.4
3,048,568	-				+1.2
3,048,568	-				+1.0
3,048,572	+				+0.8
3,048,572	+				-0.3
3,048,572	+				+1.1
3,048,572	+				-3.4
3,048,572	+				-0.6
3,048,647	+				+0.9
3,048,647	+				-2.4
3,048,648	-				+0.0
3,048,648	-				+0.0
3,048,648	-				-0.2
3,048,681	+				+2.6
3,048,681	+				+1.4
3,048,681	+				+1.9
3,048,682	-				+0.5
3,048,855	+				+1.5
3,048,855	+				+0.2
3,048,856	-				+0.4
3,048,856	-				-3.2