Strain Fitness in Pseudomonas putida KT2440 around PP_2507

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,853,236	-				+1.5
2,853,244	-				-0.3
2,853,244	-				-0.5
2,853,274	+				-1.7
2,853,274	+				+0.9
2,853,274	+				-3.8
2,853,274	+				-1.1
2,853,275	-				+0.3
2,853,453	-				+1.1
2,853,453	-				-0.5
2,853,453	-				+0.8
2,853,470	+				-3.0
2,853,471	-				-0.7
2,853,492	-				-4.3
2,853,492	-				-3.1
2,853,493	+				+0.1
2,853,494	-				-4.0
2,853,494	-				+0.5
2,853,557	+				+2.3
2,853,558	-				+1.2
2,853,604	+				+1.1
2,853,605	-				-0.5
2,853,771	+		PP_2506	0.23	-4.1
2,853,771	+		PP_2506	0.23	-0.3
2,853,771	+		PP_2506	0.23	+1.5
2,853,771	+		PP_2506	0.23	-0.2
2,853,932	+		PP_2506	0.52	+0.4
2,853,933	-		PP_2506	0.53	-3.5
2,853,933	-		PP_2506	0.53	-4.5
2,853,979	+		PP_2506	0.61	+0.1
2,853,980	-		PP_2506	0.61	+1.7
2,853,980	-		PP_2506	0.61	-3.5
2,853,980	-		PP_2506	0.61	-1.0
2,854,166	+				-0.5
2,854,219	+				+0.2
2,854,220	-				-3.1
2,854,250	+				+0.7
2,854,323	-		PP_2507	0.12	+2.2
2,854,323	-		PP_2507	0.12	+1.3
2,854,413	-		PP_2507	0.25	+1.1
2,854,413	-		PP_2507	0.25	-4.1
2,854,459	+		PP_2507	0.31	-0.6
2,854,460	-		PP_2507	0.32	+0.7
2,854,501	+		PP_2507	0.37	-4.0
2,854,501	+		PP_2507	0.37	-0.5
2,854,501	+		PP_2507	0.37	+1.8
2,854,502	-		PP_2507	0.37	-3.1
2,854,502	-		PP_2507	0.37	-4.5
2,854,502	-		PP_2507	0.37	+1.2
2,854,774	+		PP_2507	0.75	+1.2
2,854,908	-				-1.7
2,855,051	+				-0.0
2,855,087	+				+0.1
2,855,087	+				-2.9
2,855,087	+				-0.2
2,855,088	-				+0.2
2,855,088	-				+2.7
2,855,088	-				+0.8
2,855,088	-				+3.6
2,855,180	+		PP_5532	0.22	+0.6
2,855,181	-		PP_5532	0.22	+1.2
2,855,246	+		PP_5532	0.47	-0.3
2,855,247	-		PP_5532	0.47	+1.1
2,855,290	+		PP_5532	0.64	-3.7
2,855,290	+		PP_5532	0.64	+0.7
2,855,290	+		PP_5532	0.64	+1.8
2,855,290	+		PP_5532	0.64	-4.3
2,855,290	+		PP_5532	0.64	-1.0
2,855,291	-		PP_5532	0.64	-1.9
2,855,339	+		PP_5532	0.82	-2.6
2,855,339	+				-1.4
2,855,340	-		PP_5532	0.83	-3.4
2,855,340	-		PP_5532	0.83	-0.6
2,855,340	-		PP_5532	0.83	-1.0
2,855,340	-		PP_5532	0.83	+0.9
2,855,340	-		PP_5532	0.83	+0.6
2,855,520	+				-3.4
2,855,520	+				-3.6
2,855,520	+				-3.7
2,855,543	+				+0.9
2,855,578	-		PP_5533	0.18	-0.5
2,855,783	-				+0.0
2,855,807	+				+0.2
2,855,808	-				-2.1
2,855,808	-				+0.7
2,855,808	-				-0.2
2,855,845	+				+0.6
2,855,903	-				+2.2