Strain Fitness in Pseudomonas putida KT2440 around PP_2476

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,821,438	-				+2.2
2,821,485	+				+1.0
2,821,485	+				+0.9
2,821,485	+				-1.0
2,821,515	-				-4.3
2,821,633	+				+0.7
2,821,633	+				+2.0
2,821,634	-				-2.9
2,821,634	-				+0.9
2,821,634	-				-0.8
2,821,636	-				+0.1
2,821,636	-				+1.4
2,821,756	+				+0.8
2,821,757	-				+2.3
2,821,757	-				+2.1
2,821,757	-				-0.1
2,821,854	+		PP_2475	0.22	+0.8
2,821,881	+		PP_2475	0.27	+3.5
2,821,882	-		PP_2475	0.27	+1.9
2,821,906	-		PP_2475	0.31	+3.6
2,821,983	+				+3.3
2,821,984	-		PP_2475	0.44	+0.3
2,821,999	+		PP_2475	0.47	+0.7
2,822,007	+		PP_2475	0.48	+1.8
2,822,007	+		PP_2475	0.48	-3.4
2,822,007	+		PP_2475	0.48	+3.6
2,822,007	+				+2.7
2,822,007	+		PP_2475	0.48	-2.9
2,822,062	+		PP_2475	0.57	-0.1
2,822,138	+		PP_2475	0.70	+1.0
2,822,138	+		PP_2475	0.70	+2.7
2,822,206	-		PP_2475	0.81	-2.6
2,822,249	+				-0.1
2,822,249	+		PP_2475	0.89	-2.2
2,822,249	+		PP_2475	0.89	-2.1
2,822,249	+		PP_2475	0.89	+1.3
2,822,249	+		PP_2475	0.89	-3.1
2,822,253	-				+0.3
2,822,253	-		PP_2475	0.89	+0.3
2,822,444	+				+0.1
2,822,566	+		PP_2476	0.13	+1.7
2,822,566	+		PP_2476	0.13	-3.2
2,822,584	+		PP_2476	0.15	+1.4
2,822,584	+		PP_2476	0.15	-4.1
2,822,585	-		PP_2476	0.15	-4.3
2,822,585	-		PP_2476	0.15	+0.3
2,822,617	+		PP_2476	0.18	-3.0
2,822,617	+		PP_2476	0.18	-0.2
2,822,617	+		PP_2476	0.18	+0.8
2,822,618	-		PP_2476	0.18	+1.2
2,822,618	-		PP_2476	0.18	+0.3
2,822,663	+		PP_2476	0.23	-3.5
2,822,663	+		PP_2476	0.23	-0.4
2,822,663	+		PP_2476	0.23	+1.7
2,822,663	+		PP_2476	0.23	-0.3
2,822,663	+		PP_2476	0.23	-2.1
2,822,663	+		PP_2476	0.23	-1.5
2,822,663	+		PP_2476	0.23	+0.3
2,822,663	+		PP_2476	0.23	+0.9
2,822,664	-		PP_2476	0.23	+1.0
2,822,664	-		PP_2476	0.23	+0.3
2,822,664	-		PP_2476	0.23	+0.8
2,822,664	-		PP_2476	0.23	+1.0
2,822,664	-		PP_2476	0.23	+1.1
2,822,664	-		PP_2476	0.23	+1.4
2,822,695	+		PP_2476	0.26	+0.7
2,822,695	+		PP_2476	0.26	+0.6
2,822,695	+				-2.1
2,822,800	+		PP_2476	0.36	+0.8
2,822,800	+		PP_2476	0.36	+1.6
2,822,801	-		PP_2476	0.36	+0.7
2,822,801	-		PP_2476	0.36	-2.6
2,822,801	-		PP_2476	0.36	+1.1
2,822,801	-		PP_2476	0.36	+1.2
2,822,801	-		PP_2476	0.36	+0.7
2,822,839	+		PP_2476	0.40	-0.3
2,822,839	+				-2.0
2,822,839	+		PP_2476	0.40	-3.4
2,822,839	+		PP_2476	0.40	+0.3
2,822,839	+		PP_2476	0.40	-0.4
2,822,839	+		PP_2476	0.40	-0.4
2,822,839	+		PP_2476	0.40	-3.1
2,822,839	+		PP_2476	0.40	+0.4
2,822,839	+		PP_2476	0.40	-0.0
2,822,840	-		PP_2476	0.40	-2.9
2,822,840	-		PP_2476	0.40	+2.0
2,822,840	-		PP_2476	0.40	-4.1
2,822,841	+		PP_2476	0.40	+1.1
2,823,027	-		PP_2476	0.58	+1.2
2,823,092	-		PP_2476	0.64	+2.8
2,823,092	-		PP_2476	0.64	+0.1
2,823,144	+		PP_2476	0.69	+3.1
2,823,322	-		PP_2476	0.86	+0.7
2,823,394	-				-1.7
2,823,521	-				+2.2
2,823,557	+				-3.8
2,823,582	+				+0.3
2,823,582	+				+1.0
2,823,582	+				-1.4
2,823,583	-				+2.1
2,823,583	-				-3.1
2,823,588	+				-2.4
2,823,588	+				-3.2
2,823,746	+		PP_5528	0.67	-2.8
2,823,747	-		PP_5528	0.67	+1.9
2,823,807	-				+2.5
2,823,816	-				+0.4
2,823,842	-				-3.2
2,823,908	+				+0.8
2,823,979	-		PP_2477	0.12	+1.3
2,823,989	+		PP_2477	0.14	+0.7
2,823,990	-		PP_2477	0.14	+0.1
2,824,030	+		PP_2477	0.23	+1.2
2,824,030	+		PP_2477	0.23	-1.1
2,824,030	+		PP_2477	0.23	+1.3
2,824,030	+		PP_2477	0.23	-2.0
2,824,030	+		PP_2477	0.23	-2.9
2,824,031	-		PP_2477	0.23	+2.5
2,824,031	-		PP_2477	0.23	-0.1
2,824,333	+		PP_2477	0.88	-3.1
2,824,334	-		PP_2477	0.89	-0.2
2,824,334	-		PP_2477	0.89	+0.5
2,824,399	+				-3.5
2,824,415	-				+1.4
2,824,417	+				-0.2
2,824,418	-				-1.0
2,824,418	-				-0.4
2,824,418	-				-2.7
2,824,418	-				-3.9
2,824,418	-				-1.6