Strain Fitness in Pseudomonas putida KT2440 around PP_2445

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,792,063	+		PP_2444	0.47	+0.3
2,792,064	-		PP_2444	0.47	-1.0
2,792,064	-		PP_2444	0.47	+0.9
2,792,105	-		PP_2444	0.51	+1.0
2,792,219	+		PP_2444	0.64	+0.3
2,792,219	+		PP_2444	0.64	-1.5
2,792,336	+		PP_2444	0.77	+1.4
2,792,336	+		PP_2444	0.77	-4.6
2,792,337	-		PP_2444	0.77	-0.6
2,792,337	-		PP_2444	0.77	+0.4
2,792,337	-		PP_2444	0.77	+2.2
2,792,408	+		PP_2444	0.85	-1.1
2,792,409	-		PP_2444	0.85	+0.0
2,792,513	+				+0.4
2,792,514	-				+0.4
2,792,514	-				+1.6
2,792,528	+				+1.6
2,792,532	+				-3.9
2,792,532	+				-0.3
2,792,532	+				-0.3
2,792,533	-				+0.4
2,792,533	-				-0.4
2,792,533	-				-3.9
2,792,533	-				+0.7
2,792,603	-				+0.6
2,792,614	+				-1.3
2,792,615	-				-1.1
2,792,615	-				-0.4
2,792,615	-				+1.6
2,792,615	-				-4.7
2,792,653	-				+1.4
2,792,691	-				+2.1
2,792,691	-				+0.4
2,792,945	+				+1.2
2,792,946	-				+1.3
2,792,965	+				-3.9
2,792,966	-				+0.1
2,792,972	-				-4.4
2,792,992	+				-4.0
2,792,993	-				-3.4
2,793,015	+		PP_2445	0.10	-3.1
2,793,015	+		PP_2445	0.10	-3.3
2,793,076	-		PP_2445	0.18	+0.2
2,793,433	+		PP_2445	0.66	-3.3
2,793,433	+		PP_2445	0.66	-2.8
2,793,585	+		PP_2445	0.86	-0.2
2,793,586	-		PP_2445	0.86	+0.5
2,793,596	+		PP_2445	0.87	+0.7
2,793,596	+		PP_2445	0.87	+1.0
2,793,596	+		PP_2445	0.87	-1.5
2,793,596	+		PP_2445	0.87	-3.8
2,793,596	+		PP_2445	0.87	-2.1
2,793,597	-		PP_2445	0.87	-3.8
2,793,597	-		PP_2445	0.87	-0.1
2,793,597	-		PP_2445	0.87	-3.1
2,793,597	-		PP_2445	0.87	+0.4
2,793,597	-		PP_2445	0.87	-0.7
2,793,597	-		PP_2445	0.87	-1.8
2,793,602	+		PP_2445	0.88	+0.2
2,793,603	-				-2.0
2,793,695	-				-3.9
2,793,743	+				-1.8
2,793,769	+				-3.8
2,793,769	+				-1.1
2,793,770	-				-0.4
2,793,770	-				-3.7
2,793,819	+				-1.2
2,793,851	+				-0.7
2,793,851	+		PP_2446	0.18	-3.1
2,793,852	-		PP_2446	0.18	+0.7
2,793,852	-		PP_2446	0.18	-1.5
2,793,917	+		PP_2446	0.53	-1.6
2,793,918	-		PP_2446	0.54	+0.8
2,793,960	-		PP_2446	0.76	+0.4
2,793,960	-		PP_2446	0.76	-3.6
2,794,055	-				+0.6
2,794,055	-				+1.9
2,794,096	+				+2.2
2,794,096	+				+1.4
2,794,096	+				-2.9
2,794,096	+				-0.3
2,794,097	-				-0.6
2,794,097	-				+0.9
2,794,097	-				+2.0
2,794,102	+				+0.9
2,794,135	-				+0.7
2,794,136	+				+0.2
2,794,137	-				+0.8
2,794,157	+				+1.1
2,794,157	+				-1.0
2,794,158	-				-5.4
2,794,253	-		PP_2447	0.13	-4.3
2,794,359	+		PP_2447	0.27	+2.1
2,794,359	+		PP_2447	0.27	+1.6
2,794,428	-		PP_2447	0.37	+0.3
2,794,430	+		PP_2447	0.37	-0.1
2,794,431	-		PP_2447	0.37	+0.5
2,794,515	+		PP_2447	0.49	+0.7
2,794,516	-		PP_2447	0.49	+1.5
2,794,521	-		PP_2447	0.49	+0.7
2,794,636	-		PP_2447	0.65	+1.7
2,794,654	-		PP_2447	0.67	-1.7
2,794,662	+		PP_2447	0.69	-0.0