Strain Fitness in Pseudomonas putida KT2440 around PP_2292

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,617,633	+		PP_2289	0.32	+0.1
2,617,646	+		PP_2289	0.34	+1.4
2,617,646	+		PP_2289	0.34	+0.1
2,617,647	-		PP_2289	0.34	+1.3
2,617,662	-		PP_2289	0.37	-4.2
2,617,779	+		PP_2289	0.61	-3.0
2,617,779	+		PP_2289	0.61	+0.5
2,617,780	-		PP_2289	0.61	-4.4
2,617,783	-		PP_2289	0.61	-2.9
2,617,783	-		PP_2289	0.61	+2.9
2,617,783	-		PP_2289	0.61	-0.1
2,617,783	-		PP_2289	0.61	-4.1
2,617,787	-		PP_2289	0.62	-0.5
2,617,865	+		PP_2289	0.78	+0.1
2,617,866	-		PP_2289	0.78	-1.0
2,617,975	+				+0.5
2,617,976	-				-3.0
2,617,976	-				-0.9
2,618,184	+		PP_2290	0.68	+2.7
2,618,185	-		PP_2290	0.68	-0.9
2,618,185	-		PP_2290	0.68	+1.2
2,618,188	+		PP_2290	0.69	-2.2
2,618,189	-		PP_2290	0.70	+0.5
2,618,189	-		PP_2290	0.70	+1.5
2,618,189	-		PP_2290	0.70	+0.8
2,618,208	-		PP_2290	0.78	-3.8
2,618,259	-				+0.5
2,618,284	+		PP_2291	0.13	-0.3
2,618,377	+		PP_2291	0.45	-0.1
2,618,377	+		PP_2291	0.45	-4.0
2,618,497	+		PP_2291	0.87	+1.4
2,618,538	-				-4.0
2,618,578	-				-2.0
2,618,602	+				+1.3
2,618,705	+		PP_2292	0.21	+0.4
2,618,705	+		PP_2292	0.21	+2.1
2,618,705	+		PP_2292	0.21	+2.6
2,618,706	-		PP_2292	0.21	-0.4
2,618,808	-		PP_2292	0.35	+0.4
2,618,969	+		PP_2292	0.55	+1.2
2,618,970	-		PP_2292	0.56	-0.1
2,618,970	-		PP_2292	0.56	+1.8
2,618,983	+		PP_2292	0.57	-0.8
2,618,984	-		PP_2292	0.57	+1.4
2,619,075	-		PP_2292	0.69	+1.9
2,619,075	-		PP_2292	0.69	+1.2
2,619,140	+		PP_2292	0.78	+1.7
2,619,140	+		PP_2292	0.78	-1.5
2,619,202	+		PP_2292	0.86	+0.6
2,619,332	-				-3.5
2,619,341	-				+1.1
2,619,370	+				-1.0
2,619,516	-				+0.0
2,619,523	-				-0.6
2,619,563	+				-3.5
2,619,564	-				+1.5
2,619,564	-				-4.1
2,619,579	-				-3.3
2,619,700	-		PP_2293	0.14	-3.7
2,619,841	-		PP_2293	0.22	+0.4
2,620,035	-		PP_2293	0.34	+1.4
2,620,035	-		PP_2293	0.34	-1.3
2,620,068	-		PP_2293	0.36	-4.1
2,620,068	-		PP_2293	0.36	-1.4
2,620,145	+		PP_2293	0.40	+1.1
2,620,146	-		PP_2293	0.41	+0.6
2,620,255	+		PP_2293	0.47	-1.2
2,620,255	+		PP_2293	0.47	-3.2
2,620,256	-		PP_2293	0.47	-0.2
2,620,256	-		PP_2293	0.47	+1.5
2,620,266	-		PP_2293	0.48	+0.7
2,620,266	-		PP_2293	0.48	-1.0
2,620,266	-		PP_2293	0.48	+0.1