Strain Fitness in Pseudomonas putida KT2440 around PP_2277

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,597,675	+				+0.9
2,597,675	+				+0.0
2,597,676	-				+0.0
2,597,676	-				-3.2
2,597,679	-				-2.2
2,597,872	+		PP_2276	0.33	+0.6
2,597,872	+		PP_2276	0.33	+0.2
2,597,872	+		PP_2276	0.33	+1.5
2,597,873	-				-1.0
2,597,873	-		PP_2276	0.33	-3.3
2,597,873	-		PP_2276	0.33	+0.2
2,597,873	-		PP_2276	0.33	-1.2
2,597,886	+		PP_2276	0.35	+1.7
2,597,886	+		PP_2276	0.35	-2.2
2,597,887	-		PP_2276	0.35	-4.5
2,597,887	-		PP_2276	0.35	-1.2
2,598,057	+		PP_2276	0.57	-0.1
2,598,057	+		PP_2276	0.57	+0.9
2,598,057	+		PP_2276	0.57	+2.3
2,598,058	-		PP_2276	0.57	-2.2
2,598,058	-		PP_2276	0.57	+1.4
2,598,058	-		PP_2276	0.57	+1.9
2,598,058	-		PP_2276	0.57	+1.0
2,598,079	+		PP_2276	0.60	-2.2
2,598,079	+		PP_2276	0.60	+0.3
2,598,080	-		PP_2276	0.60	+0.6
2,598,080	-		PP_2276	0.60	-0.4
2,598,080	-		PP_2276	0.60	+0.8
2,598,130	+		PP_2276	0.67	-1.3
2,598,131	-		PP_2276	0.67	-0.4
2,598,142	+		PP_2276	0.69	-2.9
2,598,222	-		PP_2276	0.79	-2.2
2,598,348	-				-0.1
2,598,497	+				-3.2
2,598,498	-				+0.3
2,598,649	+				-3.8
2,598,741	+				+1.6
2,598,778	-				+1.3
2,598,778	-				+0.8
2,598,876	-		PP_2277	0.15	-1.7
2,598,881	-		PP_2277	0.16	+3.8
2,599,103	+		PP_2277	0.32	+1.2
2,599,104	-		PP_2277	0.32	+1.0
2,599,115	-		PP_2277	0.33	+3.1
2,599,156	-		PP_2277	0.36	+1.7
2,599,259	-		PP_2277	0.43	+0.3
2,599,273	+		PP_2277	0.44	+0.5
2,599,274	-		PP_2277	0.44	+2.6
2,599,351	+		PP_2277	0.50	+0.8
2,599,517	+		PP_2277	0.62	-0.4
2,599,636	+		PP_2277	0.70	-1.0
2,599,863	-		PP_2277	0.87	+1.0
2,599,882	+		PP_2277	0.88	-3.0
2,599,931	+				-4.9
2,599,932	-				+1.5
2,600,088	-				+0.1
2,600,182	-		PP_2278	0.41	-0.4
2,600,276	-		PP_2278	0.89	-3.5
2,600,294	+				+1.2
2,600,295	-				-0.6
2,600,295	-				-1.0
2,600,295	-				+0.5
2,600,295	-				+0.3
2,600,319	+				-0.3
2,600,319	+		PP_5512	0.11	+1.6
2,600,320	-		PP_5512	0.11	-0.6
2,600,331	-		PP_5512	0.16	-0.8
2,600,407	+		PP_5512	0.51	-2.9
2,600,407	+		PP_5512	0.51	-0.5
2,600,407	+		PP_5512	0.51	+1.6
2,600,407	+		PP_5512	0.51	-2.7
2,600,408	-		PP_5512	0.51	+2.2
2,600,408	-		PP_5512	0.51	-3.3
2,600,484	+		PP_5512	0.86	+1.3
2,600,484	+		PP_5512	0.86	+1.3
2,600,484	+		PP_5512	0.86	+1.4
2,600,484	+		PP_5512	0.86	+0.6
2,600,485	-		PP_5512	0.86	-0.7
2,600,485	-		PP_5512	0.86	-4.1
2,600,511	-				-3.8
2,600,512	+				-1.4
2,600,513	-				-1.7
2,600,572	+				+0.7
2,600,607	-				-3.8
2,600,632	+				-3.0
2,600,632	+				+1.6
2,600,633	-				+0.5
2,600,686	+		PP_2279	0.10	+0.5
2,600,686	+		PP_2279	0.10	-1.9
2,600,962	+		PP_2279	0.28	-4.0
2,600,963	-		PP_2279	0.28	-3.1
2,600,963	-		PP_2279	0.28	+1.4
2,600,963	-		PP_2279	0.28	-0.3
2,600,963	-		PP_2279	0.28	-1.2
2,600,992	+		PP_2279	0.30	-0.2
2,601,007	+		PP_2279	0.31	-1.1
2,601,008	-		PP_2279	0.31	-1.3
2,601,008	-		PP_2279	0.31	+0.2