Strain Fitness in Pseudomonas putida KT2440 around PP_2236

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,541,925	-		PP_2234	0.46	+0.4
2,542,055	+		PP_2234	0.59	+1.5
2,542,055	+		PP_2234	0.59	-0.2
2,542,271	+		PP_2234	0.81	-0.2
2,542,271	+		PP_2234	0.81	-4.8
2,542,409	-				-0.0
2,542,409	-				-1.7
2,542,458	-				-1.1
2,542,520	+				-2.4
2,542,521	-				+1.0
2,542,521	-				+0.3
2,542,521	-				+1.0
2,542,521	-				+1.5
2,542,524	+				+0.1
2,542,525	-				+1.1
2,542,525	-				-3.8
2,542,525	-				-3.5
2,542,593	+		PP_2235	0.14	+1.0
2,542,593	+		PP_2235	0.14	-4.6
2,542,594	-		PP_2235	0.14	-2.8
2,542,594	-		PP_2235	0.14	+0.9
2,542,600	+		PP_2235	0.15	+1.3
2,542,600	+		PP_2235	0.15	+0.8
2,542,600	+		PP_2235	0.15	-3.7
2,542,600	+		PP_2235	0.15	-2.8
2,542,600	+		PP_2235	0.15	+1.4
2,542,601	-		PP_2235	0.16	-2.3
2,542,601	-		PP_2235	0.16	+0.7
2,542,604	+		PP_2235	0.17	-0.3
2,542,604	+		PP_2235	0.17	-3.0
2,542,605	-		PP_2235	0.17	+3.6
2,542,605	-		PP_2235	0.17	-0.5
2,542,722	-		PP_2235	0.48	+0.9
2,542,907	+				+0.4
2,542,908	-				+0.9
2,542,919	+				+0.1
2,542,920	-				-3.7
2,542,986	+		PP_2236	0.11	-0.0
2,542,986	+		PP_2236	0.11	+1.0
2,542,986	+		PP_2236	0.11	-4.1
2,542,986	+		PP_2236	0.11	+0.1
2,542,987	-		PP_2236	0.11	-3.7
2,542,988	+		PP_2236	0.11	+1.9
2,542,989	-		PP_2236	0.12	+1.3
2,543,082	-		PP_2236	0.24	-0.2
2,543,082	-		PP_2236	0.24	-0.7
2,543,094	+		PP_2236	0.25	+1.2
2,543,095	-		PP_2236	0.25	-3.0
2,543,108	+		PP_2236	0.27	+1.5
2,543,108	+		PP_2236	0.27	-4.7
2,543,108	+		PP_2236	0.27	-4.0
2,543,108	+		PP_2236	0.27	-0.1
2,543,108	+		PP_2236	0.27	-1.1
2,543,108	+		PP_2236	0.27	+0.3
2,543,108	+		PP_2236	0.27	-0.8
2,543,109	-		PP_2236	0.27	+0.6
2,543,109	-		PP_2236	0.27	-3.5
2,543,137	+		PP_2236	0.31	+0.6
2,543,137	+		PP_2236	0.31	+0.1
2,543,137	+		PP_2236	0.31	+0.9
2,543,137	+		PP_2236	0.31	-2.0
2,543,137	+		PP_2236	0.31	-0.3
2,543,137	+				-0.8
2,543,137	+		PP_2236	0.31	+1.2
2,543,137	+		PP_2236	0.31	-3.1
2,543,137	+		PP_2236	0.31	+1.3
2,543,137	+		PP_2236	0.31	-3.0
2,543,138	-		PP_2236	0.31	-2.9
2,543,138	-		PP_2236	0.31	+1.4
2,543,138	-		PP_2236	0.31	-3.0
2,543,138	-		PP_2236	0.31	+2.8
2,543,138	-		PP_2236	0.31	+1.0
2,543,138	-		PP_2236	0.31	+1.4
2,543,138	-		PP_2236	0.31	+1.1
2,543,138	-		PP_2236	0.31	+1.0
2,543,138	-		PP_2236	0.31	-2.8
2,543,138	-		PP_2236	0.31	+1.5
2,543,138	-		PP_2236	0.31	+3.0
2,543,138	-		PP_2236	0.31	+1.1
2,543,267	+		PP_2236	0.48	+0.2
2,543,267	+		PP_2236	0.48	-0.3
2,543,267	+		PP_2236	0.48	-0.7
2,543,268	-		PP_2236	0.48	+1.5
2,543,268	-		PP_2236	0.48	-0.3
2,543,342	+		PP_2236	0.57	-3.8
2,543,342	+		PP_2236	0.57	+0.0
2,543,342	+		PP_2236	0.57	+0.8
2,543,405	+		PP_2236	0.65	-0.5
2,543,405	+		PP_2236	0.65	-3.9
2,543,405	+		PP_2236	0.65	-0.5
2,543,406	-		PP_2236	0.66	+0.7
2,543,520	+		PP_2236	0.80	-1.3
2,543,769	-		PP_2237	0.10	+0.1
2,543,928	+		PP_2237	0.24	-1.0
2,543,928	+				-1.2
2,543,928	+		PP_2237	0.24	+0.2
2,543,928	+		PP_2237	0.24	-0.7
2,543,929	-		PP_2237	0.25	+0.9
2,543,983	-		PP_2237	0.29	-4.1
2,544,035	+		PP_2237	0.34	-0.1
2,544,036	-		PP_2237	0.34	+1.2
2,544,036	-		PP_2237	0.34	+0.2
2,544,036	-		PP_2237	0.34	+1.2
2,544,048	+		PP_2237	0.35	-3.3
2,544,059	+				-0.2
2,544,059	+		PP_2237	0.36	+0.5
2,544,059	+		PP_2237	0.36	-0.8
2,544,060	-		PP_2237	0.36	+0.5
2,544,060	-		PP_2237	0.36	+1.3
2,544,132	+		PP_2237	0.43	-0.5
2,544,133	-		PP_2237	0.43	-0.1
2,544,498	+		PP_2237	0.75	-3.9
2,544,498	+		PP_2237	0.75	-0.3
2,544,498	+		PP_2237	0.75	-3.5
2,544,499	-		PP_2237	0.76	-0.1
2,544,499	-		PP_2237	0.76	-3.4
2,544,499	-		PP_2237	0.76	+0.3
2,544,499	-		PP_2237	0.76	-0.2
2,544,499	-		PP_2237	0.76	-0.1
2,544,499	-		PP_2237	0.76	+0.9
2,544,499	-		PP_2237	0.76	-2.7
2,544,594	+		PP_2237	0.84	-3.6
2,544,594	+		PP_2237	0.84	-0.9
2,544,595	-		PP_2237	0.84	+1.4
2,544,595	-		PP_2237	0.84	-1.6
2,544,597	+		PP_2237	0.84	-0.6
2,544,597	+		PP_2237	0.84	+1.3
2,544,597	+		PP_2237	0.84	+0.2
2,544,597	+		PP_2237	0.84	+1.0
2,544,597	+		PP_2237	0.84	+0.6
2,544,597	+		PP_2237	0.84	-3.8
2,544,597	+		PP_2237	0.84	-3.5
2,544,597	+		PP_2237	0.84	+0.6
2,544,598	-		PP_2237	0.84	-0.8
2,544,598	-		PP_2237	0.84	+0.2
2,544,598	-		PP_2237	0.84	+2.4
2,544,598	-		PP_2237	0.84	-2.0
2,544,598	-		PP_2237	0.84	+0.6
2,544,598	-		PP_2237	0.84	-0.5
2,544,598	-		PP_2237	0.84	-2.6
2,544,600	+		PP_2237	0.85	-3.9
2,544,600	+		PP_2237	0.85	-2.6
2,544,601	-		PP_2237	0.85	-3.6
2,544,601	-		PP_2237	0.85	-4.8
2,544,636	-		PP_2237	0.88	-1.2
2,544,637	+		PP_2237	0.88	-3.5
2,544,637	+		PP_2237	0.88	-3.6
2,544,637	+		PP_2237	0.88	+2.0
2,544,637	+		PP_2237	0.88	-4.5
2,544,638	-		PP_2237	0.88	-4.2
2,544,638	-		PP_2237	0.88	+0.6