Strain Fitness in Pseudomonas putida KT2440 around PP_2193

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,497,237	+		PP_2192	0.41	+1.2
2,497,238	-		PP_2192	0.41	+0.8
2,497,238	-		PP_2192	0.41	-0.9
2,497,238	-		PP_2192	0.41	+0.7
2,497,240	-		PP_2192	0.41	-2.6
2,497,360	+		PP_2192	0.52	+1.7
2,497,393	-		PP_2192	0.55	-3.0
2,497,475	+		PP_2192	0.62	+1.8
2,497,476	-		PP_2192	0.62	-0.7
2,497,852	+				-3.2
2,497,870	+				+0.3
2,497,871	-				-3.3
2,497,871	-				-0.1
2,497,976	+				-0.1
2,498,094	+				+1.1
2,498,095	-				+0.8
2,498,343	+				+1.1
2,498,394	+				+2.1
2,498,394	+		PP_2193	0.12	-3.9
2,498,395	-		PP_2193	0.12	-0.6
2,498,395	-		PP_2193	0.12	-3.6
2,498,395	-		PP_2193	0.12	+1.5
2,498,395	-		PP_2193	0.12	-1.1
2,498,395	-		PP_2193	0.12	+0.9
2,498,534	-		PP_2193	0.18	+1.0
2,498,695	-		PP_2193	0.24	-1.2
2,499,020	+		PP_2193	0.37	+1.9
2,499,021	-		PP_2193	0.38	-1.6
2,499,048	+		PP_2193	0.39	-2.2
2,499,048	+		PP_2193	0.39	-1.7
2,499,048	+		PP_2193	0.39	+2.4
2,499,048	+		PP_2193	0.39	+1.5
2,499,048	+		PP_2193	0.39	-1.3
2,499,049	-		PP_2193	0.39	-0.1
2,499,049	-		PP_2193	0.39	+0.4
2,499,049	-		PP_2193	0.39	-1.7
2,499,102	+		PP_2193	0.41	+1.8
2,499,102	+		PP_2193	0.41	+0.8
2,499,103	-		PP_2193	0.41	-0.9
2,499,121	+		PP_2193	0.42	+0.5
2,499,180	+		PP_2193	0.44	+0.2
2,499,181	-		PP_2193	0.44	+0.9
2,499,183	+		PP_2193	0.44	-0.2
2,499,183	+		PP_2193	0.44	-3.7
2,499,183	+		PP_2193	0.44	+1.5
2,499,184	-		PP_2193	0.44	+1.1
2,499,184	-		PP_2193	0.44	+0.9
2,499,212	+		PP_2193	0.45	+1.3
2,499,212	+		PP_2193	0.45	+2.2
2,499,216	+		PP_2193	0.45	+2.0
2,499,216	+		PP_2193	0.45	-2.8
2,499,216	+		PP_2193	0.45	+0.5
2,499,217	-		PP_2193	0.46	-2.6
2,499,235	-		PP_2193	0.46	+1.7
2,499,235	-		PP_2193	0.46	+0.6
2,499,279	+		PP_2193	0.48	+1.4
2,499,330	+		PP_2193	0.50	+1.7
2,499,363	+		PP_2193	0.51	+1.2
2,499,363	+		PP_2193	0.51	+0.0
2,499,363	+		PP_2193	0.51	-3.9
2,499,363	+		PP_2193	0.51	+0.9
2,499,364	-		PP_2193	0.52	-0.6
2,499,379	-		PP_2193	0.52	+1.5
2,499,414	+		PP_2193	0.54	+1.2
2,499,414	+		PP_2193	0.54	-0.7
2,499,417	+		PP_2193	0.54	-0.4
2,499,417	+		PP_2193	0.54	+2.2
2,499,418	-		PP_2193	0.54	+0.9
2,499,454	-		PP_2193	0.55	-1.0
2,499,454	-		PP_2193	0.55	-3.9
2,499,454	-		PP_2193	0.55	+1.0
2,499,521	+		PP_2193	0.58	+0.8
2,499,660	+		PP_2193	0.64	+1.0
2,499,684	+		PP_2193	0.65	-0.1
2,499,685	-		PP_2193	0.65	+0.6
2,499,801	+		PP_2193	0.69	+1.4
2,499,802	-		PP_2193	0.69	-3.4
2,499,834	+		PP_2193	0.71	-2.5
2,499,835	-		PP_2193	0.71	-0.1
2,499,835	-		PP_2193	0.71	-1.1
2,499,870	+		PP_2193	0.72	-1.1
2,499,906	+		PP_2193	0.74	+0.2
2,499,907	-		PP_2193	0.74	-0.3
2,499,909	+		PP_2193	0.74	+1.0
2,500,023	+		PP_2193	0.78	+0.6
2,500,024	-		PP_2193	0.78	+0.7
2,500,026	+		PP_2193	0.78	+1.7
2,500,026	+		PP_2193	0.78	-2.7
2,500,026	+		PP_2193	0.78	-3.2
2,500,026	+		PP_2193	0.78	-1.7
2,500,026	+		PP_2193	0.78	+1.2
2,500,026	+		PP_2193	0.78	+0.3
2,500,026	+		PP_2193	0.78	-2.1
2,500,026	+		PP_2193	0.78	+0.7
2,500,027	-		PP_2193	0.79	-1.5
2,500,027	-		PP_2193	0.79	+0.0
2,500,027	-		PP_2193	0.79	+1.2
2,500,228	-		PP_2193	0.87	-2.2
2,500,348	-				+0.4
2,500,432	-				+1.1
2,500,432	-				-0.7
2,500,432	-				-3.5
2,500,432	-				+2.1
2,500,479	+				+0.4
2,500,491	+				-1.9
2,500,491	+				-1.0
2,500,492	-				+1.5
2,500,497	+				+0.9
2,500,497	+				+0.9
2,500,497	+				-0.6
2,500,498	-				-1.1
2,500,498	-				+1.4
2,500,498	-				+1.6
2,500,498	-				+3.0
2,500,498	-				-2.8
2,500,503	+				+0.0
2,500,504	-				-0.0
2,500,524	+				+0.9
2,500,524	+				-3.7
2,500,525	-				-0.0
2,500,525	-				-2.9
2,500,527	-				-2.8
2,500,527	-				+0.2
2,500,527	-				-0.6
2,500,549	-				+0.5
2,500,611	+				+0.7
2,500,611	+				-0.1
2,500,611	+				+0.4
2,500,611	+				+0.7
2,500,612	-				+1.4
2,500,612	-				-0.8
2,500,612	-				-0.2
2,500,699	-		PP_2194	0.14	-3.1
2,500,744	+		PP_2194	0.19	+1.0
2,500,745	-		PP_2194	0.19	-3.2
2,500,751	+		PP_2194	0.19	+1.1
2,500,752	-		PP_2194	0.20	+0.2
2,500,936	+		PP_2194	0.40	+1.1
2,500,970	-		PP_2194	0.44	-2.6
2,501,011	+		PP_2194	0.49	+1.9
2,501,012	-		PP_2194	0.49	+0.5
2,501,163	+		PP_2194	0.66	-2.3
2,501,164	-		PP_2194	0.66	+1.2
2,501,164	-		PP_2194	0.66	+0.3
2,501,164	-		PP_2194	0.66	-0.3
2,501,256	+		PP_2194	0.76	-3.3
2,501,412	+				+1.0
2,501,469	+				-0.5
2,501,470	-				-0.1