Strain Fitness in Pseudomonas putida KT2440 around PP_2186

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,492,752	+		PP_2185	0.75	+1.1
2,492,752	+		PP_2185	0.75	+0.2
2,492,793	-		PP_2185	0.77	-0.8
2,492,852	-		PP_2185	0.79	+0.9
2,492,852	-		PP_2185	0.79	+0.2
2,492,858	+		PP_2185	0.79	+2.6
2,492,858	+		PP_2185	0.79	+1.0
2,492,858	+		PP_2185	0.79	-1.9
2,492,859	-		PP_2185	0.79	-1.2
2,493,054	-		PP_2185	0.86	-0.2
2,493,242	+				-4.6
2,493,242	+				+0.7
2,493,242	+				+0.2
2,493,243	-				-2.6
2,493,243	-				+0.5
2,493,502	+		PP_2186	0.22	-1.0
2,493,502	+		PP_2186	0.22	-2.9
2,493,503	-				+0.8
2,493,503	-		PP_2186	0.23	-2.0
2,493,503	-		PP_2186	0.23	-0.5
2,493,659	-				-3.7
2,493,749	+				+0.5
2,493,750	-				+0.6
2,493,764	+				+1.0
2,493,765	-				-0.1
2,493,772	-				+2.3
2,493,855	+				-3.2
2,493,855	+				-2.8
2,493,856	-				-0.6
2,493,872	+		PP_2187	0.11	-1.8
2,493,950	+		PP_2187	0.20	-3.2
2,494,012	+		PP_2187	0.28	+0.6
2,494,392	+		PP_2187	0.72	-0.6
2,494,392	+		PP_2187	0.72	+0.7
2,494,393	-		PP_2187	0.72	+0.8
2,494,393	-		PP_2187	0.72	+0.6
2,494,393	-		PP_2187	0.72	-2.8
2,494,393	-		PP_2187	0.72	+1.5
2,494,575	-				-2.8