Strain Fitness in Pseudomonas putida KT2440 around PP_2180

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,484,420	-				+1.3
2,484,420	-				+0.8
2,484,480	-				+0.2
2,484,521	+				-1.4
2,484,532	+				+1.2
2,484,565	+				+0.5
2,484,565	+				+0.8
2,484,565	+				+1.5
2,484,565	+				-0.0
2,484,565	+				+1.7
2,484,566	-				+0.6
2,484,648	-		PP_2179	0.11	-0.3
2,484,791	+		PP_2179	0.29	+0.4
2,484,791	+		PP_2179	0.29	-3.7
2,484,792	-		PP_2179	0.29	+0.2
2,484,792	-		PP_2179	0.29	-3.7
2,484,792	-		PP_2179	0.29	+0.0
2,484,886	-		PP_2179	0.41	+0.2
2,484,891	+		PP_2179	0.42	-0.8
2,485,044	+		PP_2179	0.62	+1.9
2,485,044	+		PP_2179	0.62	+0.6
2,485,044	+		PP_2179	0.62	-0.1
2,485,045	-		PP_2179	0.62	+1.3
2,485,126	-		PP_2179	0.72	-4.5
2,485,259	+		PP_2179	0.90	-1.6
2,485,308	+				+0.1
2,485,360	+				-0.5
2,485,538	+				-2.0
2,485,538	+				+0.6
2,485,538	+				+0.1
2,485,539	-				-0.1
2,485,539	-				-5.0
2,485,608	-		PP_2180	0.15	+0.9
2,485,661	+		PP_2180	0.19	-0.3
2,485,661	+		PP_2180	0.19	+0.2
2,485,662	-		PP_2180	0.19	-1.0
2,485,664	+		PP_2180	0.19	-0.6
2,485,664	+		PP_2180	0.19	+1.4
2,485,664	+		PP_2180	0.19	+0.9
2,485,665	-		PP_2180	0.19	-3.5
2,485,665	-		PP_2180	0.19	-3.4
2,485,665	-		PP_2180	0.19	-4.7
2,485,968	-		PP_2180	0.41	+0.7
2,486,129	+		PP_2180	0.53	-2.1
2,486,129	+		PP_2180	0.53	-2.7
2,486,130	-		PP_2180	0.53	-2.7
2,486,130	-		PP_2180	0.53	-0.1
2,486,130	-		PP_2180	0.53	-0.7
2,486,163	-		PP_2180	0.55	-2.6
2,486,209	+		PP_2180	0.59	-0.5
2,486,234	+		PP_2180	0.61	-0.6
2,486,238	-		PP_2180	0.61	+0.6
2,486,238	-		PP_2180	0.61	-3.3
2,486,288	+		PP_2180	0.65	-1.4
2,486,288	+		PP_2180	0.65	-4.4
2,486,289	-		PP_2180	0.65	+1.3
2,486,289	-		PP_2180	0.65	-3.1
2,486,372	+		PP_2180	0.71	-0.6
2,486,458	+		PP_2180	0.77	-3.2
2,486,471	+		PP_2180	0.78	-1.6
2,486,471	+		PP_2180	0.78	-2.6
2,486,472	-		PP_2180	0.78	+1.5
2,486,750	+				+1.0
2,486,750	+				+0.0
2,486,750	+				+2.3
2,486,750	+				-1.2
2,486,751	-				-3.7
2,486,751	-				+1.1
2,486,751	-				+0.5
2,486,751	-				+0.4
2,486,784	+				+0.8
2,486,849	+				-1.0
2,486,985	+				+1.4
2,487,149	+		PP_2181	0.36	-3.6
2,487,150	-		PP_2181	0.36	-0.9
2,487,150	-		PP_2181	0.36	+1.7
2,487,150	-		PP_2181	0.36	-0.0
2,487,156	-		PP_2181	0.37	+2.4
2,487,156	-		PP_2181	0.37	-3.7
2,487,323	+		PP_2181	0.67	-0.2
2,487,646	-				-2.2
2,487,646	-				-0.7
2,487,646	-				+0.5
2,487,646	-				+1.0
2,487,655	-				+0.6