Strain Fitness in Pseudomonas putida KT2440 around PP_2146

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,446,826	+		PP_2145	0.21	-3.4
2,446,827	-		PP_2145	0.21	-3.2
2,447,257	+		PP_2145	0.64	-1.7
2,447,258	-		PP_2145	0.64	-3.5
2,447,258	-		PP_2145	0.64	-3.5
2,447,258	-		PP_2145	0.64	-3.5
2,447,258	-		PP_2145	0.64	-2.9
2,447,434	-		PP_2145	0.81	-4.7
2,447,658	-				-3.1
2,447,668	-				-2.4
2,447,744	+				-3.5
2,447,744	+				-3.9
2,447,745	-				+1.3
2,447,745	-				-4.3
2,447,967	+				-3.6
2,448,056	+				-2.3
2,448,459	+		PP_2146	0.21	+1.2
2,448,459	+		PP_2146	0.21	+0.2
2,448,460	-		PP_2146	0.21	-4.9
2,448,460	-		PP_2146	0.21	+1.2
2,448,460	-		PP_2146	0.21	-0.2
2,448,460	-		PP_2146	0.21	-3.2
2,448,463	+		PP_2146	0.21	+1.8
2,448,463	+		PP_2146	0.21	-1.0
2,448,816	-		PP_2146	0.32	-0.2
2,448,874	-		PP_2146	0.33	-3.9
2,448,874	-		PP_2146	0.33	-1.2
2,449,208	+		PP_2146	0.43	-0.4
2,449,363	-		PP_2146	0.48	-0.6
2,449,404	+		PP_2146	0.49	-3.2
2,449,505	+		PP_2146	0.52	-0.4
2,449,583	+		PP_2146	0.55	-0.0
2,449,584	-		PP_2146	0.55	-0.4
2,449,632	+				-0.2
2,449,632	+		PP_2146	0.56	+1.3
2,449,761	+		PP_2146	0.60	-0.3
2,449,761	+		PP_2146	0.60	-0.7
2,450,007	+		PP_2146	0.68	+1.1
2,450,007	+		PP_2146	0.68	+1.5
2,450,008	-		PP_2146	0.68	+1.7
2,450,008	-		PP_2146	0.68	+1.2
2,450,008	-		PP_2146	0.68	-0.9
2,450,016	+		PP_2146	0.68	+0.5
2,450,059	+		PP_2146	0.69	+0.8
2,450,101	+		PP_2146	0.70	-0.9
2,450,102	-		PP_2146	0.70	+2.4
2,450,102	-		PP_2146	0.70	+1.1
2,450,102	-		PP_2146	0.70	+0.7
2,450,102	-		PP_2146	0.70	+0.9
2,450,136	-		PP_2146	0.71	-0.4
2,450,168	-		PP_2146	0.72	+2.4
2,450,168	-		PP_2146	0.72	-1.2
2,450,168	-		PP_2146	0.72	-0.6
2,450,178	-		PP_2146	0.73	+0.8
2,450,241	+		PP_2146	0.75	+1.4
2,450,242	-		PP_2146	0.75	+1.2
2,450,242	-		PP_2146	0.75	-1.9
2,450,244	+		PP_2146	0.75	-4.0
2,450,244	+		PP_2146	0.75	-1.4
2,450,245	-		PP_2146	0.75	-3.2
2,450,292	+		PP_2146	0.76	-4.3
2,450,292	+		PP_2146	0.76	+0.9
2,450,584	+		PP_2146	0.85	+0.4
2,450,655	+		PP_2146	0.87	+0.3
2,450,655	+		PP_2146	0.87	+3.1
2,450,886	-				+0.2
2,450,994	+				-1.7
2,450,995	-				-0.5
2,451,088	+				-3.8
2,451,088	+				-0.8
2,451,088	+				-4.1
2,451,089	-				+1.0
2,451,427	+		PP_2147	0.59	-4.5
2,451,589	+		PP_2147	0.88	-3.3
2,451,590	-		PP_2147	0.88	-3.3
2,451,590	-		PP_2147	0.88	-3.9
2,451,713	+				-5.0
2,451,781	+				-3.3
2,451,781	+				-3.7
2,451,782	-				-3.7
2,452,066	+		PP_2148	0.12	-3.9
2,452,066	+		PP_2148	0.12	-4.4
2,452,067	-		PP_2148	0.12	-3.5
2,452,067	-		PP_2148	0.12	-3.6