Strain Fitness in Pseudomonas putida KT2440 around PP_2101

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,398,707	+		PP_2100	0.74	-4.1
2,398,707	+		PP_2100	0.74	-4.2
2,398,708	-		PP_2100	0.74	-2.9
2,399,004	+		PP_2100	0.82	+2.0
2,399,005	-		PP_2100	0.82	-1.3
2,399,005	-		PP_2100	0.82	-0.6
2,399,005	-		PP_2100	0.82	+1.8
2,399,005	-		PP_2100	0.82	-0.4
2,399,020	+		PP_2100	0.82	+0.5
2,399,139	+		PP_2100	0.86	+0.1
2,399,139	+		PP_2100	0.86	+1.3
2,399,140	-		PP_2100	0.86	-1.7
2,399,140	-		PP_2100	0.86	-4.1
2,399,140	-		PP_2100	0.86	+3.3
2,399,145	+		PP_2100	0.86	-1.9
2,399,145	+		PP_2100	0.86	+0.5
2,399,145	+		PP_2100	0.86	-0.3
2,399,146	-		PP_2100	0.86	+1.3
2,399,216	+		PP_2100	0.88	+0.2
2,399,235	+		PP_2100	0.88	-4.5
2,399,275	-		PP_2100	0.89	-0.0
2,399,397	+				-0.4
2,399,398	-				-4.0
2,399,419	-				-2.0
2,399,561	+				+0.9
2,399,561	+				+1.3
2,399,567	-				+0.4
2,399,741	+		PP_2101	0.13	+0.5
2,399,741	+		PP_2101	0.13	-0.0
2,399,742	-		PP_2101	0.13	+0.2
2,399,909	+		PP_2101	0.40	-2.0
2,399,927	-		PP_2101	0.43	-2.2
2,399,927	-		PP_2101	0.43	-4.1
2,399,978	+		PP_2101	0.51	-4.1
2,400,008	+				-1.1
2,400,100	+		PP_2101	0.71	-3.3
2,400,201	-		PP_2101	0.87	-3.9
2,400,201	-		PP_2101	0.87	-3.1
2,400,261	+				-1.2
2,400,261	+				+0.0
2,400,265	+				+0.7
2,400,265	+				-1.0
2,400,265	+				-3.8
2,400,266	-				-0.3
2,400,266	-				+1.7
2,400,366	+				-2.5
2,400,366	+				-0.3
2,400,366	+				-3.2
2,400,366	+				+1.0
2,400,368	+				-3.6
2,400,389	+				-3.4
2,400,421	+				-0.1
2,400,421	+				-3.9
2,400,458	-				+1.2
2,400,478	-				-2.7
2,400,606	+				+0.3
2,400,606	+				+0.0
2,400,606	+				-1.5
2,400,606	+				+1.3
2,400,606	+				+0.9
2,400,606	+				-0.6
2,400,606	+				-0.1
2,400,607	-				+0.4
2,400,607	-				+1.8
2,400,607	-				+1.6
2,400,607	-				-0.9
2,400,607	-				-0.6
2,400,607	-				+0.5
2,400,730	+		PP_2102	0.13	-2.3
2,400,731	-		PP_2102	0.13	-3.6
2,400,731	-		PP_2102	0.13	+0.8
2,400,731	-		PP_2102	0.13	+1.3
2,400,795	+		PP_2102	0.18	-0.3
2,400,795	+		PP_2102	0.18	-3.5
2,400,796	-		PP_2102	0.18	-4.1
2,400,813	-		PP_2102	0.19	+1.0
2,401,051	-		PP_2102	0.37	+1.8
2,401,108	-		PP_2102	0.41	-3.0
2,401,108	-		PP_2102	0.41	+0.0
2,401,108	-		PP_2102	0.41	+0.0
2,401,155	+		PP_2102	0.45	-3.6
2,401,156	-		PP_2102	0.45	+2.1
2,401,279	-		PP_2102	0.54	-0.3