Strain Fitness in Pseudomonas putida KT2440 around PP_2069

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,353,612	+		PP_2068	0.28	-0.5
2,353,612	+		PP_2068	0.28	+0.0
2,353,613	-		PP_2068	0.28	+0.9
2,353,913	-		PP_2068	0.52	+1.0
2,354,175	+		PP_2068	0.72	+1.4
2,354,175	+		PP_2068	0.72	+0.9
2,354,176	-		PP_2068	0.72	-0.4
2,354,176	-		PP_2068	0.72	+0.6
2,354,179	+				+1.8
2,354,180	-		PP_2068	0.72	+0.7
2,354,225	-		PP_2068	0.76	-0.5
2,354,225	-		PP_2068	0.76	+1.2
2,354,225	-		PP_2068	0.76	-0.9
2,354,343	-		PP_2068	0.85	-2.5
2,354,552	+				-3.3
2,354,622	+				-1.2
2,354,623	-				-0.9
2,354,731	+				+0.1
2,354,732	-		PP_2069	0.10	-3.1
2,354,732	-		PP_2069	0.10	-0.8
2,354,735	+		PP_2069	0.10	+0.7
2,354,736	-		PP_2069	0.10	-0.8
2,354,870	-		PP_2069	0.20	+0.9
2,355,081	+		PP_2069	0.35	-0.4
2,355,081	+		PP_2069	0.35	+0.4
2,355,081	+		PP_2069	0.35	+1.3
2,355,189	+		PP_2069	0.42	+1.7
2,355,427	+		PP_2069	0.59	+0.1
2,355,445	+		PP_2069	0.60	+0.7
2,355,446	-		PP_2069	0.60	-2.9
2,355,489	+		PP_2069	0.63	+0.1
2,355,490	-		PP_2069	0.63	-0.3
2,355,543	+		PP_2069	0.67	-0.5
2,355,569	-		PP_2069	0.69	-2.9
2,355,661	+		PP_2069	0.75	-0.2
2,355,662	-		PP_2069	0.75	-0.0
2,355,662	-		PP_2069	0.75	-1.0
2,355,662	-		PP_2069	0.75	-0.1
2,355,662	-		PP_2069	0.75	+0.3
2,355,665	+		PP_2069	0.76	-3.7
2,355,666	-		PP_2069	0.76	-4.4
2,355,686	+		PP_2069	0.77	+0.1
2,355,789	+		PP_2069	0.84	+1.3
2,355,790	-		PP_2069	0.84	+0.5
2,355,790	-		PP_2069	0.84	+1.6
2,355,817	+		PP_2069	0.86	+2.3
2,355,817	+		PP_2069	0.86	-0.0
2,355,817	+		PP_2069	0.86	-0.3
2,355,818	-		PP_2069	0.86	-0.7
2,355,818	-		PP_2069	0.86	+1.8
2,355,898	-				-1.0
2,355,999	+				-0.6
2,355,999	+				-0.3
2,356,000	-				-4.0
2,356,000	-				-1.2
2,356,115	+				+0.4
2,356,116	-				+0.1
2,356,128	+				+0.4
2,356,183	-		PP_2070	0.10	+1.3
2,356,296	-		PP_2070	0.26	+2.2
2,356,850	+				+0.6