Strain Fitness in Pseudomonas putida KT2440 around PP_2068

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,352,384	+		PP_2067	0.42	-3.9
2,352,384	+		PP_2067	0.42	+0.7
2,352,385	-		PP_2067	0.42	-2.1
2,352,463	-		PP_2067	0.47	+1.2
2,352,754	-				+0.8
2,352,774	+		PP_2067	0.68	+2.6
2,352,775	-		PP_2067	0.68	+1.8
2,352,948	-		PP_2067	0.79	-4.4
2,353,295	+				-3.9
2,353,295	+				+0.8
2,353,295	+				+1.3
2,353,295	+				-3.9
2,353,296	-				-3.9
2,353,320	+				-3.4
2,353,497	+		PP_2068	0.19	-3.9
2,353,497	+		PP_2068	0.19	-3.0
2,353,498	-		PP_2068	0.19	-0.2
2,353,498	-		PP_2068	0.19	-3.2
2,353,498	-		PP_2068	0.19	+1.5
2,353,546	+		PP_2068	0.23	-0.9
2,353,546	+		PP_2068	0.23	+1.2
2,353,547	-		PP_2068	0.23	-0.3
2,353,558	-		PP_2068	0.24	+2.4
2,353,561	+		PP_2068	0.24	+2.6
2,353,561	+		PP_2068	0.24	-3.4
2,353,562	-		PP_2068	0.24	+0.5
2,353,562	-		PP_2068	0.24	+0.6
2,353,562	-		PP_2068	0.24	+0.3
2,353,612	+		PP_2068	0.28	-0.5
2,353,612	+		PP_2068	0.28	+0.0
2,353,613	-		PP_2068	0.28	+0.9
2,353,913	-		PP_2068	0.52	+1.0
2,354,175	+		PP_2068	0.72	+1.4
2,354,175	+		PP_2068	0.72	+0.9
2,354,176	-		PP_2068	0.72	-0.4
2,354,176	-		PP_2068	0.72	+0.6
2,354,179	+				+1.8
2,354,180	-		PP_2068	0.72	+0.7
2,354,225	-		PP_2068	0.76	-0.5
2,354,225	-		PP_2068	0.76	+1.2
2,354,225	-		PP_2068	0.76	-0.9
2,354,343	-		PP_2068	0.85	-2.5
2,354,552	+				-3.3
2,354,622	+				-1.2
2,354,623	-				-0.9
2,354,731	+				+0.1
2,354,732	-		PP_2069	0.10	-3.1
2,354,732	-		PP_2069	0.10	-0.8
2,354,735	+		PP_2069	0.10	+0.7
2,354,736	-		PP_2069	0.10	-0.8
2,354,870	-		PP_2069	0.20	+0.9
2,355,081	+		PP_2069	0.35	-0.4
2,355,081	+		PP_2069	0.35	+0.4
2,355,081	+		PP_2069	0.35	+1.3
2,355,189	+		PP_2069	0.42	+1.7
2,355,427	+		PP_2069	0.59	+0.1
2,355,445	+		PP_2069	0.60	+0.7
2,355,446	-		PP_2069	0.60	-2.9
2,355,489	+		PP_2069	0.63	+0.1
2,355,490	-		PP_2069	0.63	-0.3