Strain Fitness in Pseudomonas putida KT2440 around PP_2031

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,307,193	+				+0.8
2,307,193	+		PP_2029	0.59	-3.3
2,307,704	+		PP_2030	0.17	-0.2
2,307,705	-		PP_2030	0.17	-3.6
2,307,715	+		PP_2030	0.19	-3.1
2,307,715	+		PP_2030	0.19	-2.5
2,307,715	+		PP_2030	0.19	-3.8
2,307,715	+		PP_2030	0.19	-3.8
2,307,715	+		PP_2030	0.19	-2.6
2,307,716	-		PP_2030	0.19	-4.6
2,307,716	-				-1.6
2,307,722	-		PP_2030	0.20	-1.0
2,307,722	-		PP_2030	0.20	-3.9
2,307,887	+		PP_2030	0.54	-0.1
2,308,827	-		PP_2031	0.75	-4.0
2,308,877	-		PP_2031	0.80	-3.8
2,308,877	-		PP_2031	0.80	-3.5
2,309,348	+		PP_2032	0.30	-2.9
2,309,348	+		PP_2032	0.30	-4.3
2,309,372	+		PP_2032	0.32	-4.0
2,309,372	+		PP_2032	0.32	-3.6
2,309,372	+		PP_2032	0.32	-3.3
2,309,373	-		PP_2032	0.32	-4.0
2,309,373	-		PP_2032	0.32	-3.5
2,309,488	+		PP_2032	0.44	-4.9
2,309,516	-				+3.7
2,309,558	+		PP_2032	0.52	-0.6
2,309,559	-		PP_2032	0.52	-4.3
2,309,621	+		PP_2032	0.58	-2.5
2,309,622	-		PP_2032	0.58	-2.3
2,309,622	-		PP_2032	0.58	-1.9
2,309,622	-		PP_2032	0.58	-3.3
2,309,725	-		PP_2032	0.69	-2.7
2,309,733	+		PP_2032	0.70	+0.2
2,309,733	+		PP_2032	0.70	+0.6
2,309,734	-		PP_2032	0.70	-1.0
2,309,965	+				-4.1
2,309,965	+				-4.1
2,309,965	+				-3.5
2,309,977	-				-3.1