Strain Fitness in Pseudomonas putida KT2440 around PP_1890

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,131,247	-		PP_1889	0.62	+0.5
2,131,247	-		PP_1889	0.62	+1.2
2,131,264	+		PP_1889	0.63	+0.8
2,131,265	-		PP_1889	0.63	+2.1
2,131,265	-		PP_1889	0.63	-1.5
2,131,265	-		PP_1889	0.63	-4.7
2,131,265	-				-1.5
2,131,273	+		PP_1889	0.63	+0.5
2,131,401	+		PP_1889	0.68	-1.0
2,131,402	-		PP_1889	0.68	-4.3
2,131,473	+		PP_1889	0.71	+0.8
2,131,476	-		PP_1889	0.71	+1.9
2,131,489	+		PP_1889	0.72	-2.1
2,131,489	+		PP_1889	0.72	-0.8
2,131,490	-		PP_1889	0.72	+0.3
2,131,577	+		PP_1889	0.75	+1.0
2,131,578	-		PP_1889	0.75	+1.1
2,131,591	+		PP_1889	0.76	+0.2
2,131,609	+		PP_1889	0.76	-0.4
2,131,654	+		PP_1889	0.78	-0.4
2,131,654	+		PP_1889	0.78	+0.5
2,131,654	+		PP_1889	0.78	-1.4
2,131,655	-		PP_1889	0.78	+1.8
2,131,655	-		PP_1889	0.78	+0.1
2,131,655	-		PP_1889	0.78	+1.4
2,131,968	+				+1.8
2,131,968	+				-2.7
2,131,968	+				-0.5
2,131,968	+				-3.8
2,131,968	+				-0.1
2,132,104	+				+0.4
2,132,168	+				-1.0
2,132,169	-				+0.8
2,132,169	-				+0.3
2,132,181	+				-1.1
2,132,182	-				+1.3
2,132,182	-				+0.6
2,132,233	+				-3.6
2,132,233	+				-3.1
2,132,233	+				+2.5
2,132,233	+				+1.2
2,132,234	-				-0.6
2,132,234	-				-1.4
2,132,234	-				+0.6
2,132,234	-				-2.9
2,132,281	+				-1.0
2,132,281	+				-3.7
2,132,282	-				-0.3
2,132,480	+		PP_1890	0.32	-1.9
2,132,484	+		PP_1890	0.32	+1.0
2,132,484	+		PP_1890	0.32	+0.7
2,132,485	-		PP_1890	0.32	-1.9
2,132,485	-		PP_1890	0.32	-0.2
2,132,485	-		PP_1890	0.32	+1.5
2,132,551	+		PP_1890	0.41	+0.1
2,132,759	+		PP_1890	0.68	-3.1
2,132,759	+		PP_1890	0.68	+0.0
2,132,777	+		PP_1890	0.70	-0.9
2,132,778	-		PP_1890	0.70	+2.2
2,132,800	+		PP_1890	0.73	+0.5
2,132,800	+		PP_1890	0.73	+1.7
2,132,800	+		PP_1890	0.73	-3.9
2,132,800	+		PP_1890	0.73	-3.4
2,132,801	-		PP_1890	0.73	+2.4
2,132,801	-		PP_1890	0.73	-0.5
2,132,837	+		PP_1890	0.78	+2.6
2,132,878	-		PP_1890	0.83	-1.5
2,132,878	-		PP_1890	0.83	+1.6
2,132,912	+		PP_1890	0.87	+3.0
2,133,015	+				-2.7
2,133,016	-				+1.7
2,133,016	-				+0.5
2,133,056	+				+0.8
2,133,062	+				+0.1
2,133,062	+				-2.3
2,133,066	+				+1.1
2,133,066	+				-1.0
2,133,066	+				-0.8
2,133,066	+				-4.0
2,133,067	-				+1.4
2,133,067	-				-0.7
2,133,084	+				+1.7
2,133,084	+				-0.5
2,133,085	-				-4.0
2,133,085	-				-1.2
2,133,138	+		PP_1891	0.14	-1.8
2,133,138	+		PP_1891	0.14	+2.0
2,133,138	+		PP_1891	0.14	+1.4
2,133,139	-		PP_1891	0.14	+0.3
2,133,139	-		PP_1891	0.14	-3.0
2,133,141	+		PP_1891	0.14	+0.5
2,133,142	-		PP_1891	0.14	+0.4
2,133,274	+		PP_1891	0.39	+0.9
2,133,275	-		PP_1891	0.39	-3.8
2,133,275	-		PP_1891	0.39	-1.0
2,133,380	-		PP_1891	0.58	+0.3
2,133,490	+		PP_1891	0.79	-3.3
2,133,491	-		PP_1891	0.79	+0.1
2,133,590	+				-4.1
2,133,590	+				-0.3
2,133,590	+				+0.1
2,133,591	-				+2.4
2,133,610	-				-0.1
2,133,695	+				+0.9
2,133,695	+				+1.2
2,133,696	-				+0.1
2,133,722	-				+0.1
2,133,722	-				-4.2
2,133,777	+				-4.5
2,133,777	+				-2.2
2,133,777	+				-4.0
2,133,777	+				+0.4
2,133,777	+				-0.0
2,133,832	+				-0.5