Strain Fitness in Pseudomonas putida KT2440 around PP_1869

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
2,092,458	+				-2.6
2,092,458	+				-2.3
2,092,459	-				-2.2
2,092,459	-				-4.3
2,092,570	+		PP_1869	0.16	-0.1
2,092,570	+		PP_1869	0.16	+1.6
2,092,723	+		PP_1869	0.35	-0.1
2,092,739	+		PP_1869	0.37	+0.2
2,092,739	+		PP_1869	0.37	+1.0
2,092,740	-		PP_1869	0.37	+0.6
2,092,740	-		PP_1869	0.37	-3.6
2,092,740	-		PP_1869	0.37	-0.3
2,092,742	+		PP_1869	0.37	-3.9
2,092,742	+		PP_1869	0.37	+0.4
2,092,748	+		PP_1869	0.38	-4.2
2,092,748	+		PP_1869	0.38	-4.4
2,092,748	+		PP_1869	0.38	+0.3
2,092,748	+		PP_1869	0.38	-0.5
2,092,748	+		PP_1869	0.38	+0.4
2,092,749	-		PP_1869	0.38	-0.2
2,092,749	-		PP_1869	0.38	+0.5
2,092,749	-		PP_1869	0.38	-0.4
2,092,749	-		PP_1869	0.38	+0.7
2,092,749	-		PP_1869	0.38	+0.5
2,092,749	-		PP_1869	0.38	+0.5
2,092,749	-		PP_1869	0.38	+1.6
2,092,857	+				-0.2
2,092,998	+		PP_1869	0.70	+0.9
2,092,998	+		PP_1869	0.70	+1.4
2,092,999	-		PP_1869	0.70	-1.5
2,093,020	-		PP_1869	0.72	+0.4
2,093,230	+				+1.0
2,093,230	+				+0.8
2,093,251	+				-3.6
2,093,256	-				+0.6
2,093,256	-				-0.5
2,093,386	+		PP_1870	0.11	-0.1
2,093,387	-		PP_1870	0.11	+0.4
2,093,398	+		PP_1870	0.13	-4.3
2,093,398	+		PP_1870	0.13	+0.1
2,093,399	-		PP_1870	0.13	-1.8
2,093,498	+		PP_1870	0.28	-0.7
2,093,498	+		PP_1870	0.28	+0.1
2,093,666	+		PP_1870	0.54	+0.1
2,093,674	+		PP_1870	0.55	-3.6
2,093,674	+		PP_1870	0.55	+1.4
2,093,675	-		PP_1870	0.55	+0.9
2,093,722	+		PP_1870	0.63	-3.9
2,093,722	+		PP_1870	0.63	-3.6
2,093,722	+		PP_1870	0.63	+1.1
2,093,723	-				-0.2
2,093,723	-		PP_1870	0.63	+3.3
2,093,723	-		PP_1870	0.63	+1.0
2,093,724	+		PP_1870	0.63	-0.1
2,093,724	+		PP_1870	0.63	-3.9
2,093,725	-		PP_1870	0.63	-1.8
2,093,725	-		PP_1870	0.63	+1.5
2,093,947	+				-1.0
2,093,948	-				+0.2
2,093,948	-				+1.7
2,093,970	+				-0.1
2,093,971	-				+2.1