Strain Fitness in Pseudomonas putida KT2440 around PP_1724

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
1,923,034	+		PP_1722	0.79	+0.1
1,923,064	+		PP_1722	0.82	+0.7
1,923,065	-		PP_1722	0.82	-0.5
1,923,065	-		PP_1722	0.82	+0.6
1,923,206	+				+2.9
1,923,206	+				-3.4
1,923,226	+				+0.5
1,923,227	-				-3.2
1,923,306	+				+0.2
1,923,306	+				-0.0
1,923,307	-				-0.7
1,923,363	+		PP_1723	0.15	+0.8
1,923,363	+		PP_1723	0.15	-4.0
1,923,364	-		PP_1723	0.15	-2.1
1,923,585	+		PP_1723	0.43	+2.3
1,923,585	+		PP_1723	0.43	-0.6
1,923,585	+		PP_1723	0.43	+0.5
1,923,585	+		PP_1723	0.43	+0.2
1,923,586	-		PP_1723	0.43	-1.0
1,923,586	-		PP_1723	0.43	-3.0
1,923,612	+		PP_1723	0.46	+1.0
1,923,612	+		PP_1723	0.46	-4.3
1,923,613	-		PP_1723	0.46	-0.1
1,923,613	-		PP_1723	0.46	-3.0
1,923,666	+		PP_1723	0.53	+0.4
1,923,667	-		PP_1723	0.53	+2.3
1,923,762	+		PP_1723	0.65	-3.6
1,923,763	-		PP_1723	0.65	+0.6
1,923,763	-		PP_1723	0.65	-0.4
1,923,818	+		PP_1723	0.72	+0.9
1,923,882	+		PP_1723	0.80	+1.8
1,923,882	+		PP_1723	0.80	+0.9
1,923,883	-		PP_1723	0.80	-0.3
1,923,883	-		PP_1723	0.80	+1.3
1,923,990	+				-3.2
1,923,990	+				+1.8
1,923,991	-				+0.7
1,924,042	+				+1.5
1,924,042	+				+2.4
1,924,042	+				+1.0
1,924,042	+				-4.1
1,924,042	+				+1.0
1,924,043	-				+0.5
1,924,043	-				-4.1
1,924,043	-				-3.1
1,924,068	+				-3.4
1,924,068	+				+1.5
1,924,069	-				+0.9
1,924,069	-				-0.3
1,924,180	-		PP_1724	0.18	+0.6
1,924,207	+		PP_1724	0.21	+1.1
1,924,207	+		PP_1724	0.21	+0.7
1,924,207	+		PP_1724	0.21	+1.5
1,924,208	-		PP_1724	0.21	+0.5
1,924,408	+		PP_1724	0.45	-3.1
1,924,408	+		PP_1724	0.45	+0.1
1,924,408	+		PP_1724	0.45	+1.7
1,924,409	-		PP_1724	0.45	+0.0
1,924,409	-		PP_1724	0.45	+1.4
1,924,414	+		PP_1724	0.46	+1.7
1,924,414	+		PP_1724	0.46	-0.1
1,924,414	+		PP_1724	0.46	+1.9
1,924,415	-		PP_1724	0.46	-0.9
1,924,415	-		PP_1724	0.46	-0.1
1,924,415	-		PP_1724	0.46	+2.0
1,924,415	-		PP_1724	0.46	+1.6
1,924,441	+		PP_1724	0.49	-1.7
1,924,442	-		PP_1724	0.49	-0.0
1,924,442	-		PP_1724	0.49	-4.3
1,924,445	+		PP_1724	0.50	-3.8
1,924,445	+		PP_1724	0.50	+0.5
1,924,445	+		PP_1724	0.50	+0.3
1,924,445	+		PP_1724	0.50	+1.2
1,924,445	+		PP_1724	0.50	+2.0
1,924,446	-		PP_1724	0.50	-0.5
1,924,446	-		PP_1724	0.50	-3.3
1,924,616	-		PP_1724	0.70	+0.7
1,924,616	-		PP_1724	0.70	+0.3
1,924,854	+				+2.2
1,924,854	+				+1.5
1,924,855	-				-0.1
1,924,855	-				+1.4
1,924,855	-				+1.5
1,924,855	-				+0.9
1,925,072	+		PP_1725	0.25	+0.0
1,925,072	+		PP_1725	0.25	+0.5
1,925,072	+		PP_1725	0.25	+0.2
1,925,073	-		PP_1725	0.25	-4.1
1,925,106	+		PP_1725	0.29	+1.4
1,925,106	+		PP_1725	0.29	+1.0
1,925,107	-		PP_1725	0.29	-0.1
1,925,107	-		PP_1725	0.29	-0.9
1,925,290	-		PP_1725	0.51	+0.3
1,925,290	-		PP_1725	0.51	-4.1
1,925,367	+		PP_1725	0.60	+1.3
1,925,368	-		PP_1725	0.60	-3.5
1,925,388	+		PP_1725	0.62	+0.7
1,925,389	-		PP_1725	0.63	+0.8
1,925,521	-		PP_1725	0.78	-0.1
1,925,521	-		PP_1725	0.78	-0.0
1,925,562	+		PP_1725	0.83	+0.7
1,925,590	-		PP_1725	0.87	+2.0
1,925,628	+				-0.5
1,925,628	+				-0.6
1,925,628	+				+1.7
1,925,628	+				+1.4
1,925,628	+				+1.7
1,925,629	-				+0.9
1,925,723	+				+0.7
1,925,723	+				+1.8
1,925,723	+				+0.4
1,925,723	+				+0.6
1,925,723	+				+0.9
1,925,723	+				+0.3
1,925,724	-				-0.0
1,925,724	-				+1.1
1,925,729	+				-2.6
1,925,729	+				+0.5
1,925,730	-				-1.1
1,925,730	-				+1.5
1,925,736	+				+0.4
1,925,746	+				-0.9
1,925,746	+				-3.8
1,925,747	-				+0.0
1,925,785	+				+0.0
1,925,785	+				-3.4
1,925,786	-				+1.1
1,925,786	-				+1.0
1,925,786	-				-3.2
1,925,786	-				-3.4
1,925,786	-				+0.6
1,925,802	+				-0.2