Strain Fitness in Pseudomonas putida KT2440 around PP_1193

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
1,366,627	-		PP_1191	0.90	-3.5
1,366,627	-		PP_1191	0.90	+0.5
1,366,627	-		PP_1191	0.90	+2.1
1,366,794	+				+1.4
1,366,794	+				-3.9
1,366,794	+				-3.7
1,366,794	+				+0.8
1,366,794	+				+0.6
1,366,794	+				-3.3
1,366,794	+				-2.9
1,366,795	-				-0.3
1,366,795	-				+0.9
1,366,795	-				+1.0
1,366,795	-				+0.3
1,366,919	+		PP_1192	0.20	-1.3
1,366,920	-		PP_1192	0.21	+0.0
1,366,961	+				-0.7
1,366,961	+		PP_1192	0.29	-4.8
1,366,988	+		PP_1192	0.35	-0.3
1,366,988	+		PP_1192	0.35	-4.8
1,366,988	+		PP_1192	0.35	+1.3
1,367,163	+		PP_1192	0.70	+0.9
1,367,165	+		PP_1192	0.71	+1.4
1,367,165	+		PP_1192	0.71	+1.6
1,367,165	+		PP_1192	0.71	-1.6
1,367,165	+		PP_1192	0.71	-0.6
1,367,165	+		PP_1192	0.71	-3.8
1,367,166	-				-1.1
1,367,166	-		PP_1192	0.71	-0.6
1,367,166	-		PP_1192	0.71	-3.6
1,367,218	+		PP_1192	0.82	+0.1
1,367,218	+		PP_1192	0.82	-0.4
1,367,218	+		PP_1192	0.82	+0.7
1,367,219	-		PP_1192	0.82	-0.5
1,367,264	-				+1.0
1,367,307	+				+1.3
1,367,307	+				+2.6
1,367,307	+				+0.2
1,367,307	+				+1.6
1,367,307	+				-0.7
1,367,307	+				+2.1
1,367,308	-				+0.4
1,367,308	-				+0.4
1,367,308	-				-0.2
1,367,308	-				+0.7
1,367,368	+				+1.4
1,367,369	-				+1.8
1,367,372	-				-3.9
1,367,404	+				-3.4
1,367,426	+				-0.8
1,367,471	+				-2.9
1,367,518	+				+1.7
1,367,518	+				-0.0
1,367,519	-				+0.1
1,367,584	-				-2.0
1,368,008	+		PP_1193	0.73	-0.9
1,368,009	-		PP_1193	0.73	-4.7
1,368,009	-		PP_1193	0.73	-1.1
1,368,009	-		PP_1193	0.73	+0.5
1,368,023	+		PP_1193	0.75	-4.7
1,368,024	-		PP_1193	0.75	+0.0
1,368,186	+				+1.5
1,368,212	-				+0.8
1,368,240	+				+0.5
1,368,240	+				-3.4
1,368,240	+				-4.1
1,368,241	-				-0.6
1,368,241	-				+0.1
1,368,241	-				-0.2
1,368,241	-				-0.2
1,368,293	+				+0.5
1,368,330	+				+1.2
1,368,331	-				-0.7
1,368,452	+		PP_1194	0.11	+0.4
1,368,453	-		PP_1194	0.12	+1.2
1,368,456	+		PP_1194	0.12	-1.0
1,368,456	+		PP_1194	0.12	+1.6
1,368,456	+		PP_1194	0.12	-3.3
1,368,456	+		PP_1194	0.12	-0.3
1,368,457	-		PP_1194	0.12	-0.1
1,368,457	-		PP_1194	0.12	+0.7
1,368,560	+		PP_1194	0.24	+1.2
1,368,560	+		PP_1194	0.24	+1.1
1,368,561	-		PP_1194	0.24	+0.3
1,368,568	+		PP_1194	0.25	+0.1
1,368,569	-		PP_1194	0.25	+0.5
1,368,569	-		PP_1194	0.25	-1.2
1,368,569	-		PP_1194	0.25	+1.0
1,368,576	-		PP_1194	0.26	-4.5
1,368,597	-		PP_1194	0.28	-3.1
1,368,632	+		PP_1194	0.33	-0.7
1,368,643	+		PP_1194	0.34	-0.4
1,368,644	-		PP_1194	0.34	-2.4
1,368,664	+		PP_1194	0.36	-0.4
1,368,664	+		PP_1194	0.36	+1.3
1,368,665	-		PP_1194	0.36	-0.3
1,368,665	-		PP_1194	0.36	+0.2
1,368,910	-		PP_1194	0.65	-0.9
1,368,989	+		PP_1194	0.74	-2.3
1,368,990	-		PP_1194	0.74	+0.7
1,368,999	+		PP_1194	0.75	-1.9
1,368,999	+		PP_1194	0.75	+1.5
1,368,999	+		PP_1194	0.75	-2.5
1,368,999	+		PP_1194	0.75	-4.3
1,369,000	-		PP_1194	0.76	-3.0
1,369,000	-		PP_1194	0.76	-2.8
1,369,000	-		PP_1194	0.76	-0.6
1,369,000	-		PP_1194	0.76	-0.3
1,369,000	-		PP_1194	0.76	-2.9
1,369,000	-		PP_1194	0.76	-0.2
1,369,045	+		PP_1194	0.81	+0.9
1,369,069	+		PP_1194	0.84	-1.1
1,369,070	-		PP_1194	0.84	+1.5
1,369,070	-		PP_1194	0.84	+1.9
1,369,070	-		PP_1194	0.84	-0.4
1,369,070	-		PP_1194	0.84	-3.7
1,369,155	+				-1.1
1,369,155	+				+3.3
1,369,155	+				-3.6
1,369,161	+				+1.0