Strain Fitness in Pseudomonas putida KT2440 around PP_1121

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
1,283,264	+		PP_1119	0.70	+0.5
1,283,286	-		PP_1119	0.74	+1.4
1,283,286	-		PP_1119	0.74	-3.8
1,283,286	-		PP_1119	0.74	+1.0
1,283,294	+		PP_1119	0.76	-0.1
1,283,345	+		PP_1119	0.87	-0.4
1,283,345	+		PP_1119	0.87	-2.3
1,283,346	-		PP_1119	0.87	-1.5
1,283,346	-		PP_1119	0.87	+0.2
1,283,346	-		PP_1119	0.87	+1.1
1,283,419	+				-1.3
1,283,420	-				+1.3
1,283,420	-				-3.5
1,283,420	-				+0.1
1,283,420	-				+1.0
1,283,420	-				-4.3
1,283,480	+		PP_1120	0.14	+0.7
1,283,480	+		PP_1120	0.14	-1.8
1,283,480	+		PP_1120	0.14	+0.2
1,283,480	+		PP_1120	0.14	+1.0
1,283,480	+		PP_1120	0.14	-3.8
1,283,480	+				-0.1
1,283,480	+		PP_1120	0.14	-3.8
1,283,480	+		PP_1120	0.14	-0.5
1,283,480	+		PP_1120	0.14	-0.6
1,283,480	+		PP_1120	0.14	-4.8
1,283,481	-		PP_1120	0.15	-3.8
1,283,481	-		PP_1120	0.15	+0.5
1,283,481	-		PP_1120	0.15	+0.8
1,283,481	-		PP_1120	0.15	-0.0
1,283,481	-		PP_1120	0.15	-0.9
1,283,481	-		PP_1120	0.15	-1.0
1,283,481	-		PP_1120	0.15	+1.1
1,283,482	+		PP_1120	0.15	+0.9
1,283,482	+		PP_1120	0.15	-4.1
1,283,482	+		PP_1120	0.15	+0.9
1,283,482	+		PP_1120	0.15	-3.7
1,283,483	-		PP_1120	0.15	-0.6
1,283,483	-		PP_1120	0.15	+0.9
1,283,490	+		PP_1120	0.16	-1.1
1,283,490	+		PP_1120	0.16	+1.7
1,283,490	+		PP_1120	0.16	-1.8
1,283,490	+		PP_1120	0.16	+0.5
1,283,491	-		PP_1120	0.17	+0.2
1,283,491	-		PP_1120	0.17	-0.1
1,283,491	-		PP_1120	0.17	+0.1
1,283,491	-		PP_1120	0.17	-0.0
1,283,491	-		PP_1120	0.17	+2.9
1,283,491	-		PP_1120	0.17	+0.0
1,283,497	+		PP_1120	0.18	+1.6
1,283,497	+		PP_1120	0.18	-0.0
1,283,498	-		PP_1120	0.18	+0.6
1,283,498	-		PP_1120	0.18	+0.7
1,283,813	+		PP_1120	0.82	+2.9
1,283,813	+		PP_1120	0.82	-1.1
1,283,818	-		PP_1120	0.83	+1.8
1,283,977	+				+1.9
1,283,977	+				-0.1
1,283,977	+				+0.5
1,283,977	+				-0.1
1,283,978	-				+0.9
1,283,978	-				-4.0
1,283,978	-				-0.2
1,283,982	+				-0.3
1,283,982	+				+0.3
1,283,982	+				-0.2
1,283,983	-				-2.9
1,283,983	-				-0.2
1,284,013	+				+0.6
1,284,013	+				-4.4
1,284,013	+				+0.6
1,284,070	+				-2.0
1,284,070	+				+0.5
1,284,071	-				+1.2
1,284,071	-				-4.6
1,284,071	-				+0.4
1,284,071	-				-1.1
1,284,073	+				+1.5
1,284,073	+				-0.3
1,284,073	+				-3.5
1,284,073	+				-2.2
1,284,073	+				+1.1
1,284,074	-				+2.0
1,284,074	-				-1.0
1,284,094	+				+0.6
1,284,173	-		PP_1121	0.16	-1.1
1,284,173	-		PP_1121	0.16	-0.3
1,284,173	-		PP_1121	0.16	-2.0
1,284,173	-		PP_1121	0.16	-0.4
1,284,173	-		PP_1121	0.16	+1.1
1,284,255	+		PP_1121	0.28	+0.7
1,284,255	+		PP_1121	0.28	+0.3
1,284,489	-		PP_1121	0.61	+0.9
1,284,534	-		PP_1121	0.68	-0.0
1,284,534	-		PP_1121	0.68	+2.2
1,284,573	+		PP_1121	0.74	-0.5
1,284,574	-		PP_1121	0.74	-1.6
1,284,574	-		PP_1121	0.74	-0.9
1,284,574	-		PP_1121	0.74	-4.4
1,284,574	-		PP_1121	0.74	+1.4
1,284,732	-				-0.5
1,284,753	+				+1.1
1,285,068	-		PP_1122	0.37	-2.1
1,285,388	+		PP_1122	0.78	-2.3
1,285,649	+				-3.3
1,285,649	+				+0.2
1,285,649	+				+1.1
1,285,649	+				+0.5
1,285,649	+				+0.1
1,285,649	+				+2.4
1,285,649	+				-0.2
1,285,649	+				+2.4
1,285,649	+				+0.5
1,285,649	+				+0.5
1,285,649	+				-0.5
1,285,650	-				-2.8
1,285,650	-				+0.6
1,285,650	-				+1.0
1,285,650	-				-4.4
1,285,650	-				-0.3
1,285,650	-				-0.5
1,285,650	-				-3.0
1,285,650	-				+0.7
1,285,650	-				+0.9
1,285,650	-				-3.1
1,285,662	+				-0.0