Strain Fitness in Pseudomonas putida KT2440 around PP_0925

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
1,065,873	-				+0.5
1,065,975	+		PP_0924	0.17	+0.9
1,065,975	+		PP_0924	0.17	+0.3
1,065,975	+		PP_0924	0.17	+1.2
1,065,975	+		PP_0924	0.17	-0.3
1,065,976	-		PP_0924	0.17	+0.3
1,065,976	-		PP_0924	0.17	-0.3
1,065,976	-		PP_0924	0.17	+0.4
1,065,977	+		PP_0924	0.18	-1.0
1,065,977	+		PP_0924	0.18	-1.0
1,065,977	+				-1.7
1,065,978	-		PP_0924	0.18	-0.6
1,065,978	-		PP_0924	0.18	+1.1
1,065,978	-		PP_0924	0.18	+3.4
1,066,015	-		PP_0924	0.23	-4.3
1,066,079	+		PP_0924	0.31	+1.7
1,066,140	+		PP_0924	0.39	+0.4
1,066,160	+		PP_0924	0.42	-0.0
1,066,160	+		PP_0924	0.42	+0.4
1,066,166	+		PP_0924	0.43	+2.0
1,066,166	+		PP_0924	0.43	-0.8
1,066,166	+		PP_0924	0.43	-0.3
1,066,167	-		PP_0924	0.43	-0.7
1,066,167	-		PP_0924	0.43	-0.4
1,066,219	-		PP_0924	0.50	-3.2
1,066,252	-		PP_0924	0.54	+0.2
1,066,427	+		PP_0924	0.77	+1.9
1,066,427	+		PP_0924	0.77	+0.2
1,066,428	-		PP_0924	0.77	+1.7
1,066,428	-		PP_0924	0.77	+0.0
1,066,490	-		PP_0924	0.85	-3.8
1,066,490	-		PP_0924	0.85	+1.8
1,066,571	+				+1.5
1,066,571	+				-1.2
1,066,572	-				-4.1
1,066,600	+				-0.4
1,066,600	+				-2.6
1,066,601	-				-1.4
1,066,601	-				-3.5
1,066,612	+				-1.1
1,066,665	+				-0.2
1,066,665	+				+0.3
1,066,665	+				+1.9
1,066,666	-				+1.5
1,066,670	-				-0.5
1,066,670	-				-1.3
1,066,728	+				+0.3
1,067,288	+		PP_0925	0.59	-3.1
1,067,288	+		PP_0925	0.59	-1.2
1,067,288	+		PP_0925	0.59	-0.8
1,067,288	+		PP_0925	0.59	+0.3
1,067,321	+		PP_0925	0.63	+0.1
1,067,321	+		PP_0925	0.63	+1.2
1,067,322	-		PP_0925	0.63	-3.8
1,067,322	-		PP_0925	0.63	+0.3
1,067,352	-		PP_0925	0.67	+0.2
1,067,690	-				-0.0
1,067,761	-				+1.0
1,067,797	+				-5.0
1,067,945	-		PP_0926	0.12	-4.8
1,068,009	+		PP_0926	0.18	+2.6
1,068,009	+		PP_0926	0.18	-0.8
1,068,054	+		PP_0926	0.23	+0.5
1,068,055	-		PP_0926	0.23	+0.0
1,068,138	+		PP_0926	0.32	+1.0
1,068,138	+		PP_0926	0.32	+0.7
1,068,138	+		PP_0926	0.32	+2.2
1,068,138	+		PP_0926	0.32	+0.5
1,068,138	+		PP_0926	0.32	-3.8
1,068,139	-		PP_0926	0.32	-4.5
1,068,139	-		PP_0926	0.32	+1.1
1,068,139	-		PP_0926	0.32	-3.1
1,068,140	+		PP_0926	0.32	+0.6
1,068,201	+		PP_0926	0.39	-1.2
1,068,202	-		PP_0926	0.39	+0.4
1,068,210	+		PP_0926	0.40	+0.2
1,068,211	-		PP_0926	0.40	+0.1
1,068,211	-		PP_0926	0.40	+1.2
1,068,258	+		PP_0926	0.45	-1.4
1,068,258	+		PP_0926	0.45	-4.2
1,068,258	+		PP_0926	0.45	-0.1
1,068,258	+		PP_0926	0.45	-3.0
1,068,258	+		PP_0926	0.45	-2.6
1,068,259	-		PP_0926	0.45	+0.8
1,068,259	-		PP_0926	0.45	+0.8
1,068,281	-		PP_0926	0.47	-0.8
1,068,291	+		PP_0926	0.48	-0.6
1,068,504	-		PP_0926	0.71	-3.9
1,068,504	-		PP_0926	0.71	+0.2
1,068,624	+		PP_0926	0.83	-0.6
1,068,625	-				-0.5
1,068,625	-		PP_0926	0.83	-1.3
1,068,625	-		PP_0926	0.83	+0.9
1,068,625	-		PP_0926	0.83	+1.4
1,068,628	+				+0.0
1,068,628	+		PP_0926	0.84	+0.6
1,068,629	-		PP_0926	0.84	+0.3
1,068,629	-		PP_0926	0.84	-0.8