Strain Fitness in Pseudomonas putida KT2440 around PP_0819

Experiment: PUT 8 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0818 and PP_0819 are separated by 161 nucleotidesPP_0819 and PP_0820 are separated by 192 nucleotidesPP_0820 and PP_5460 are separated by 86 nucleotides PP_0818: PP_0818 - conserved protein of unknown function, at 956,681 to 957,808 _0818 PP_0819: PP_0819 - conserved ferredoxin-like protein of unknown function, at 957,970 to 958,353 _0819 PP_0820: PP_0820 - GCN5-related N-acetyltransferase, at 958,546 to 959,109 _0820 PP_5460: PP_5460 - conserved membrane protein of unknown function, at 959,196 to 959,735 _5460 Position (kb) 957 958 959Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 956.996 kb on + strand, within PP_0818at 956.997 kb on - strand, within PP_0818at 957.068 kb on + strand, within PP_0818at 957.240 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.288 kb on + strand, within PP_0818at 957.288 kb on + strand, within PP_0818at 957.289 kb on - strand, within PP_0818at 957.317 kb on - strand, within PP_0818at 957.317 kb on - strand, within PP_0818at 957.330 kb on - strand, within PP_0818at 957.330 kb on - strand, within PP_0818at 957.330 kb on - strand, within PP_0818at 957.333 kb on + strand, within PP_0818at 957.333 kb on + strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.341 kb on + strand, within PP_0818at 957.342 kb on - strand, within PP_0818at 957.409 kb on - strand, within PP_0818at 957.409 kb on - strand, within PP_0818at 957.596 kb on + strand, within PP_0818at 957.596 kb on + strand, within PP_0818at 957.629 kb on + strand, within PP_0818at 957.630 kb on - strand, within PP_0818at 957.630 kb on - strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.653 kb on + strand, within PP_0818at 957.654 kb on - strand, within PP_0818at 957.654 kb on - strand, within PP_0818at 957.660 kb on + strand, within PP_0818at 957.712 kb on + strandat 957.744 kb on - strandat 957.762 kb on + strandat 957.762 kb on + strandat 957.763 kb on - strandat 957.763 kb on - strandat 957.791 kb on + strandat 957.893 kb on - strandat 957.979 kb on + strandat 957.979 kb on + strandat 957.980 kb on - strandat 957.980 kb on - strandat 957.980 kb on - strandat 957.981 kb on + strandat 957.982 kb on - strandat 957.982 kb on - strandat 958.064 kb on + strand, within PP_0819at 958.065 kb on - strand, within PP_0819at 958.085 kb on + strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.182 kb on + strand, within PP_0819at 958.279 kb on + strand, within PP_0819at 958.357 kb on - strandat 958.357 kb on - strandat 958.508 kb on - strandat 958.741 kb on + strand, within PP_0820at 958.742 kb on - strand, within PP_0820at 958.774 kb on + strand, within PP_0820at 958.774 kb on + strand, within PP_0820at 958.775 kb on - strand, within PP_0820at 958.888 kb on + strand, within PP_0820at 958.888 kb on + strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 958.889 kb on - strand, within PP_0820at 959.077 kb on + strandat 959.077 kb on + strandat 959.078 kb on - strandat 959.078 kb on - strandat 959.102 kb on + strandat 959.102 kb on + strandat 959.103 kb on - strandat 959.115 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.165 kb on + strandat 959.166 kb on - strandat 959.166 kb on - strandat 959.216 kb on + strandat 959.216 kb on + strandat 959.232 kb on + strandat 959.232 kb on + strandat 959.232 kb on + strandat 959.232 kb on + strandat 959.282 kb on + strand, within PP_5460at 959.283 kb on - strand, within PP_5460at 959.338 kb on - strand, within PP_5460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PUT 8 MOI 1
remove
956,996 + PP_0818 0.28 -3.5
956,997 - PP_0818 0.28 +0.8
957,068 + PP_0818 0.34 +0.1
957,240 + PP_0818 0.50 +1.4
957,252 + PP_0818 0.51 +0.7
957,252 + PP_0818 0.51 -0.1
957,252 + PP_0818 0.51 +2.5
957,252 + PP_0818 0.51 +0.9
957,253 - PP_0818 0.51 -1.1
957,253 - PP_0818 0.51 +1.1
957,253 - PP_0818 0.51 -4.6
957,253 - PP_0818 0.51 -0.4
957,253 - PP_0818 0.51 +0.5
957,253 - PP_0818 0.51 -0.5
957,253 - PP_0818 0.51 -0.6
957,288 + PP_0818 0.54 -1.3
957,288 + PP_0818 0.54 -2.0
957,289 - PP_0818 0.54 +2.4
957,317 - PP_0818 0.56 +0.0
957,317 - PP_0818 0.56 +0.4
957,330 - PP_0818 0.58 -0.2
957,330 - PP_0818 0.58 -0.1
957,330 - PP_0818 0.58 +2.3
957,333 + PP_0818 0.58 +0.3
957,333 + PP_0818 0.58 -0.2
957,334 - PP_0818 0.58 -3.7
957,334 - PP_0818 0.58 +0.2
957,334 - PP_0818 0.58 +0.3
957,334 - PP_0818 0.58 -0.3
957,341 + PP_0818 0.59 -0.8
957,342 - PP_0818 0.59 -0.5
957,409 - PP_0818 0.65 -1.0
957,409 - PP_0818 0.65 +1.0
957,596 + PP_0818 0.81 +1.3
957,596 + PP_0818 0.81 -4.4
957,629 + PP_0818 0.84 +0.9
957,630 - PP_0818 0.84 +0.7
957,630 - PP_0818 0.84 +0.7
957,646 + PP_0818 0.86 -0.8
957,646 + PP_0818 0.86 -0.5
957,646 + PP_0818 0.86 -1.2
957,646 + PP_0818 0.86 +0.6
957,646 + PP_0818 0.86 +0.4
957,646 + PP_0818 0.86 -4.3
957,646 + PP_0818 0.86 +1.6
957,653 + PP_0818 0.86 -1.4
957,654 - PP_0818 0.86 -4.1
957,654 - PP_0818 0.86 -0.8
957,660 + PP_0818 0.87 -4.0
957,712 + +0.6
957,744 - +0.8
957,762 + +0.3
957,762 + +0.4
957,763 - +2.1
957,763 - -1.9
957,791 + +0.6
957,893 - -4.5
957,979 + +0.9
957,979 + -1.1
957,980 - +1.0
957,980 - +0.6
957,980 - +1.2
957,981 + -0.8
957,982 - -2.7
957,982 - -3.4
958,064 + PP_0819 0.24 -3.9
958,065 - PP_0819 0.25 -4.0
958,085 + PP_0819 0.30 -0.9
958,086 - PP_0819 0.30 +0.2
958,086 - PP_0819 0.30 -0.8
958,086 - PP_0819 0.30 -4.6
958,086 - PP_0819 0.30 -2.7
958,182 + PP_0819 0.55 +0.7
958,279 + PP_0819 0.80 -3.3
958,357 - +0.9
958,357 - +0.7
958,508 - +1.3
958,741 + PP_0820 0.35 -4.2
958,742 - PP_0820 0.35 -3.5
958,774 + PP_0820 0.40 +1.6
958,774 + PP_0820 0.40 -3.4
958,775 - PP_0820 0.41 -1.0
958,888 + PP_0820 0.61 -0.2
958,888 + PP_0820 0.61 +0.9
958,889 - PP_0820 0.61 +0.9
958,889 - PP_0820 0.61 +1.2
958,889 - PP_0820 0.61 -0.5
958,889 - PP_0820 0.61 +0.7
958,889 - PP_0820 0.61 -0.5
958,889 - PP_0820 0.61 -0.2
959,077 + +1.3
959,077 + +0.8
959,078 - -0.5
959,078 - -0.8
959,102 + +1.3
959,102 + -0.0
959,103 - -1.5
959,115 + +0.2
959,165 + +0.1
959,165 + +1.0
959,165 + +0.8
959,165 + -0.4
959,165 + -0.5
959,165 + +0.3
959,166 - -0.9
959,166 - +0.2
959,216 + +0.6
959,216 + -1.3
959,232 + +1.6
959,232 + -0.5
959,232 + -0.1
959,232 + +0.7
959,282 + PP_5460 0.16 -0.8
959,283 - PP_5460 0.16 -2.7
959,338 - PP_5460 0.26 -3.2

Or see this region's nucleotide sequence