Experiment: PUT 8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0254 and PP_0255 are separated by 56 nucleotides PP_0255 and PP_0256 are separated by 196 nucleotides
PP_0254: PP_0254 - conserved protein of unknown function, at 308,854 to 309,294
_0254
PP_0255: PP_0255 - conserved exported protein of unknown function, at 309,351 to 309,833
_0255
PP_0256: PP_0256 - putative oxidoreductase, at 310,030 to 312,375
_0256
Position (kb) 308
309
310 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 307.935 kb on + strand at 307.936 kb on - strand at 308.006 kb on - strand at 308.053 kb on - strand at 308.139 kb on - strand at 308.236 kb on - strand at 308.341 kb on - strand at 308.363 kb on + strand at 308.364 kb on - strand at 308.388 kb on + strand at 308.389 kb on - strand at 308.607 kb on + strand at 308.703 kb on + strand at 308.704 kb on - strand at 308.787 kb on + strand at 308.788 kb on - strand at 308.788 kb on - strand at 309.134 kb on + strand, within PP_0254 at 309.134 kb on + strand, within PP_0254 at 309.135 kb on - strand, within PP_0254 at 309.139 kb on + strand, within PP_0254 at 309.292 kb on + strand at 309.353 kb on - strand at 309.388 kb on + strand at 309.388 kb on + strand at 309.389 kb on - strand at 309.389 kb on - strand at 309.487 kb on + strand, within PP_0255 at 309.487 kb on + strand, within PP_0255 at 309.487 kb on + strand, within PP_0255 at 309.487 kb on + strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.492 kb on - strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.539 kb on + strand, within PP_0255 at 309.539 kb on + strand, within PP_0255 at 309.575 kb on + strand, within PP_0255 at 309.823 kb on + strand at 309.823 kb on + strand at 309.824 kb on - strand at 309.824 kb on - strand at 309.824 kb on - strand at 309.847 kb on + strand at 309.847 kb on + strand at 309.848 kb on - strand at 309.848 kb on - strand at 309.874 kb on - strand at 309.919 kb on + strand at 309.942 kb on - strand at 309.946 kb on - strand at 309.985 kb on + strand at 310.102 kb on - strand at 310.148 kb on + strand at 310.151 kb on + strand at 310.151 kb on + strand at 310.152 kb on - strand at 310.174 kb on + strand at 310.174 kb on + strand at 310.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PUT 8 MOI 1 remove 307,935 + -5.3 307,936 - -5.5 308,006 - -4.9 308,053 - -4.1 308,139 - -5.1 308,236 - -4.9 308,341 - -4.9 308,363 + -5.6 308,364 - -5.7 308,388 + -3.3 308,389 - -5.7 308,607 + -4.7 308,703 + -2.3 308,704 - -4.0 308,787 + -0.9 308,788 - -0.0 308,788 - -2.8 309,134 + PP_0254 0.63 +0.4 309,134 + PP_0254 0.63 +0.8 309,135 - PP_0254 0.64 +1.2 309,139 + PP_0254 0.65 +2.1 309,292 + -0.7 309,353 - +1.7 309,388 + -1.6 309,388 + -4.4 309,389 - +1.7 309,389 - +1.7 309,487 + PP_0255 0.28 -1.3 309,487 + PP_0255 0.28 -0.9 309,487 + PP_0255 0.28 +1.5 309,487 + PP_0255 0.28 -1.5 309,488 - PP_0255 0.28 -0.5 309,488 - PP_0255 0.28 -0.3 309,488 - PP_0255 0.28 +0.2 309,488 - PP_0255 0.28 -0.7 309,492 - PP_0255 0.29 +1.3 309,535 + PP_0255 0.38 -3.4 309,535 + PP_0255 0.38 +1.1 309,535 + PP_0255 0.38 -0.5 309,535 + PP_0255 0.38 +0.4 309,536 - PP_0255 0.38 -3.6 309,536 - PP_0255 0.38 +0.6 309,536 - PP_0255 0.38 +0.4 309,536 - PP_0255 0.38 -0.7 309,536 - PP_0255 0.38 +0.4 309,536 - PP_0255 0.38 +0.6 309,536 - PP_0255 0.38 +0.7 309,536 - PP_0255 0.38 -4.2 309,536 - PP_0255 0.38 -0.5 309,539 + PP_0255 0.39 -0.6 309,539 + PP_0255 0.39 -0.4 309,575 + PP_0255 0.46 +0.0 309,823 + +1.3 309,823 + -0.9 309,824 - -0.3 309,824 - -0.4 309,824 - -1.4 309,847 + +0.8 309,847 + +1.4 309,848 - -4.4 309,848 - -1.7 309,874 - +0.7 309,919 + +0.4 309,942 - +1.4 309,946 - +0.2 309,985 + -0.6 310,102 - -5.6 310,148 + -0.1 310,151 + -0.4 310,151 + +0.4 310,152 - +0.4 310,174 + -0.4 310,174 + +0.0 310,194 + -1.1
Or see this region's nucleotide sequence