Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22785 and PS417_22790 are separated by 50 nucleotides PS417_22790 and PS417_22795 are separated by 246 nucleotides PS417_22795 and PS417_22800 are separated by 66 nucleotides
PS417_22785: PS417_22785 - molecular chaperone GroEL, at 4,937,405 to 4,939,051
_22785
PS417_22790: PS417_22790 - molecular chaperone GroES, at 4,939,102 to 4,939,398
_22790
PS417_22795: PS417_22795 - exclusion suppressor FxsA, at 4,939,645 to 4,940,121
_22795
PS417_22800: PS417_22800 - heme iron utilization protein, at 4,940,188 to 4,940,919
_22800
Position (kb) 4939
4940 Strain fitness (log2 ratio) -1
0
1
2 at 4939.539 kb on - strand at 4939.553 kb on - strand at 4939.553 kb on - strand at 4939.562 kb on - strand at 4939.562 kb on - strand at 4939.603 kb on + strand at 4939.843 kb on + strand, within PS417_22795 at 4940.069 kb on - strand, within PS417_22795 at 4940.163 kb on + strand at 4940.164 kb on - strand at 4940.164 kb on - strand at 4940.254 kb on + strand at 4940.297 kb on + strand, within PS417_22800 at 4940.297 kb on + strand, within PS417_22800 at 4940.299 kb on + strand, within PS417_22800 at 4940.313 kb on + strand, within PS417_22800 at 4940.390 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,939,539 - -1.0 4,939,553 - -0.4 4,939,553 - +0.0 4,939,562 - +2.0 4,939,562 - +0.1 4,939,603 + -0.4 4,939,843 + PS417_22795 0.42 -0.5 4,940,069 - PS417_22795 0.89 -0.6 4,940,163 + +1.0 4,940,164 - +0.2 4,940,164 - -0.2 4,940,254 + +0.8 4,940,297 + PS417_22800 0.15 -0.3 4,940,297 + PS417_22800 0.15 +1.0 4,940,299 + PS417_22800 0.15 +0.0 4,940,313 + PS417_22800 0.17 +0.3 4,940,390 + +0.0
Or see this region's nucleotide sequence