Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21285 and PS417_21290 are separated by 9 nucleotides PS417_21290 and PS417_21295 are separated by 70 nucleotides PS417_21295 and PS417_21300 are separated by 2 nucleotides
PS417_21285: PS417_21285 - hypothetical protein, at 4,626,533 to 4,626,895
_21285
PS417_21290: PS417_21290 - ABC transporter substrate-binding protein, at 4,626,905 to 4,627,720
_21290
PS417_21295: PS417_21295 - electron transfer flavoprotein subunit beta, at 4,627,791 to 4,628,720
_21295
PS417_21300: PS417_21300 - electron transporter RnfB, at 4,628,723 to 4,629,472
_21300
Position (kb) 4627
4628
4629 Strain fitness (log2 ratio) -1
0
1
2
3 at 4627.075 kb on - strand, within PS417_21290 at 4627.097 kb on + strand, within PS417_21290 at 4627.098 kb on - strand, within PS417_21290 at 4627.098 kb on - strand, within PS417_21290 at 4627.176 kb on + strand, within PS417_21290 at 4627.176 kb on + strand, within PS417_21290 at 4627.176 kb on + strand, within PS417_21290 at 4627.335 kb on + strand, within PS417_21290 at 4627.371 kb on + strand, within PS417_21290 at 4627.401 kb on + strand, within PS417_21290 at 4627.402 kb on - strand, within PS417_21290 at 4627.402 kb on - strand, within PS417_21290 at 4627.402 kb on - strand, within PS417_21290 at 4627.551 kb on - strand, within PS417_21290 at 4627.551 kb on - strand, within PS417_21290 at 4627.680 kb on - strand at 4627.773 kb on - strand at 4627.773 kb on - strand at 4627.775 kb on - strand at 4627.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,627,075 - PS417_21290 0.21 +1.9 4,627,097 + PS417_21290 0.24 +3.6 4,627,098 - PS417_21290 0.24 +0.3 4,627,098 - PS417_21290 0.24 -0.3 4,627,176 + PS417_21290 0.33 +0.2 4,627,176 + PS417_21290 0.33 +0.8 4,627,176 + PS417_21290 0.33 +0.3 4,627,335 + PS417_21290 0.53 +0.3 4,627,371 + PS417_21290 0.57 +0.2 4,627,401 + PS417_21290 0.61 -0.8 4,627,402 - PS417_21290 0.61 -0.2 4,627,402 - PS417_21290 0.61 -0.1 4,627,402 - PS417_21290 0.61 -0.0 4,627,551 - PS417_21290 0.79 +0.3 4,627,551 - PS417_21290 0.79 +0.4 4,627,680 - +0.1 4,627,773 - -1.0 4,627,773 - -0.0 4,627,775 - +0.3 4,627,775 - +0.7
Or see this region's nucleotide sequence