Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19205 and PS417_19210 are separated by 130 nucleotides PS417_19210 and PS417_19215 are separated by 91 nucleotides
PS417_19205: PS417_19205 - membrane protein, at 4,161,566 to 4,162,522
_19205
PS417_19210: PS417_19210 - acetyl-CoA acetyltransferase, at 4,162,653 to 4,163,837
_19210
PS417_19215: PS417_19215 - polyphosphate kinase, at 4,163,929 to 4,165,455
_19215
Position (kb) 4162
4163
4164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4161.699 kb on + strand, within PS417_19205 at 4161.700 kb on - strand, within PS417_19205 at 4161.832 kb on + strand, within PS417_19205 at 4161.933 kb on + strand, within PS417_19205 at 4161.934 kb on - strand, within PS417_19205 at 4161.934 kb on - strand, within PS417_19205 at 4161.996 kb on + strand, within PS417_19205 at 4161.997 kb on - strand, within PS417_19205 at 4162.010 kb on - strand, within PS417_19205 at 4162.047 kb on + strand, within PS417_19205 at 4162.130 kb on + strand, within PS417_19205 at 4162.130 kb on + strand, within PS417_19205 at 4162.251 kb on + strand, within PS417_19205 at 4162.251 kb on + strand, within PS417_19205 at 4162.251 kb on + strand, within PS417_19205 at 4162.252 kb on - strand, within PS417_19205 at 4162.260 kb on + strand, within PS417_19205 at 4162.260 kb on + strand, within PS417_19205 at 4162.560 kb on + strand at 4162.601 kb on + strand at 4162.730 kb on + strand at 4162.730 kb on + strand at 4162.825 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.249 kb on - strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.405 kb on - strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.826 kb on + strand at 4163.827 kb on - strand at 4163.827 kb on - strand at 4163.842 kb on + strand at 4163.881 kb on - strand at 4163.931 kb on - strand at 4164.117 kb on - strand, within PS417_19215 at 4164.425 kb on + strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.622 kb on + strand, within PS417_19215 at 4164.623 kb on - strand, within PS417_19215
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,161,699 + PS417_19205 0.14 +0.9 4,161,700 - PS417_19205 0.14 +1.2 4,161,832 + PS417_19205 0.28 -0.3 4,161,933 + PS417_19205 0.38 +0.8 4,161,934 - PS417_19205 0.38 -1.4 4,161,934 - PS417_19205 0.38 +0.3 4,161,996 + PS417_19205 0.45 -0.9 4,161,997 - PS417_19205 0.45 +0.1 4,162,010 - PS417_19205 0.46 +0.3 4,162,047 + PS417_19205 0.50 +0.3 4,162,130 + PS417_19205 0.59 -1.3 4,162,130 + PS417_19205 0.59 +0.5 4,162,251 + PS417_19205 0.72 +0.1 4,162,251 + PS417_19205 0.72 -0.1 4,162,251 + PS417_19205 0.72 +0.2 4,162,252 - PS417_19205 0.72 -1.8 4,162,260 + PS417_19205 0.73 -0.3 4,162,260 + PS417_19205 0.73 +0.7 4,162,560 + -0.1 4,162,601 + +0.1 4,162,730 + -0.1 4,162,730 + +0.4 4,162,825 + PS417_19210 0.15 +0.7 4,163,248 + PS417_19210 0.50 +0.6 4,163,248 + PS417_19210 0.50 +1.8 4,163,248 + PS417_19210 0.50 +0.8 4,163,249 - PS417_19210 0.50 -0.0 4,163,332 + PS417_19210 0.57 +0.7 4,163,332 + PS417_19210 0.57 +1.3 4,163,332 + PS417_19210 0.57 -0.2 4,163,332 + PS417_19210 0.57 -2.0 4,163,333 - PS417_19210 0.57 +1.6 4,163,333 - PS417_19210 0.57 +0.4 4,163,333 - PS417_19210 0.57 -0.2 4,163,333 - PS417_19210 0.57 -0.9 4,163,333 - PS417_19210 0.57 -1.9 4,163,405 - PS417_19210 0.63 -1.9 4,163,644 + PS417_19210 0.84 -0.2 4,163,644 + PS417_19210 0.84 +1.0 4,163,826 + +0.8 4,163,827 - -0.6 4,163,827 - -0.1 4,163,842 + -0.5 4,163,881 - +0.1 4,163,931 - -0.5 4,164,117 - PS417_19215 0.12 +2.0 4,164,425 + PS417_19215 0.32 -2.6 4,164,477 - PS417_19215 0.36 +0.2 4,164,477 - PS417_19215 0.36 -0.4 4,164,622 + PS417_19215 0.45 +1.3 4,164,623 - PS417_19215 0.45 +0.5
Or see this region's nucleotide sequence