Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04425 and PS417_04430 are separated by 124 nucleotides PS417_04430 and PS417_04435 are separated by 2 nucleotides PS417_04435 and PS417_04440 are separated by 164 nucleotides
PS417_04425: PS417_04425 - histidinol-phosphate aminotransferase, at 983,344 to 984,396
_04425
PS417_04430: PS417_04430 - uracil transporter, at 984,521 to 985,795
_04430
PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436
_04435
PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158
_04440
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 983.557 kb on + strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.675 kb on - strand, within PS417_04425 at 983.823 kb on - strand, within PS417_04425 at 983.823 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.999 kb on + strand at 984.000 kb on - strand, within PS417_04425 at 984.124 kb on + strand, within PS417_04425 at 984.125 kb on - strand, within PS417_04425 at 984.163 kb on - strand, within PS417_04425 at 984.458 kb on + strand at 984.458 kb on + strand at 984.459 kb on - strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.470 kb on - strand at 984.519 kb on - strand at 984.523 kb on - strand at 984.523 kb on - strand at 984.842 kb on - strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.939 kb on + strand, within PS417_04430 at 984.940 kb on - strand, within PS417_04430 at 984.940 kb on - strand at 985.210 kb on - strand, within PS417_04430 at 985.381 kb on + strand, within PS417_04430 at 985.420 kb on + strand, within PS417_04430 at 985.420 kb on + strand, within PS417_04430 at 985.421 kb on - strand, within PS417_04430 at 985.504 kb on + strand, within PS417_04430 at 985.504 kb on + strand, within PS417_04430 at 985.505 kb on - strand, within PS417_04430 at 985.505 kb on - strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.507 kb on - strand, within PS417_04430 at 985.507 kb on - strand, within PS417_04430 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.863 kb on - strand, within PS417_04435 at 985.901 kb on + strand, within PS417_04435 at 985.939 kb on + strand, within PS417_04435 at 985.940 kb on - strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.176 kb on + strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.233 kb on - strand, within PS417_04435 at 986.283 kb on - strand, within PS417_04435 at 986.315 kb on + strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.367 kb on + strand, within PS417_04435 at 986.368 kb on - strand, within PS417_04435 at 986.385 kb on + strand at 986.386 kb on - strand at 986.477 kb on + strand at 986.478 kb on - strand at 986.500 kb on + strand at 986.500 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.503 kb on - strand at 986.510 kb on + strand at 986.510 kb on + strand at 986.511 kb on - strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.555 kb on + strand at 986.555 kb on + strand at 986.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 983,557 + PS417_04425 0.20 +0.4 983,558 - PS417_04425 0.20 -0.2 983,558 - PS417_04425 0.20 -1.9 983,558 - PS417_04425 0.20 +1.2 983,675 - PS417_04425 0.31 +0.8 983,823 - PS417_04425 0.45 +0.5 983,823 - PS417_04425 0.45 -0.4 983,894 - PS417_04425 0.52 -0.6 983,894 - PS417_04425 0.52 +0.9 983,894 - PS417_04425 0.52 +0.9 983,999 + +0.9 984,000 - PS417_04425 0.62 +4.6 984,124 + PS417_04425 0.74 -1.6 984,125 - PS417_04425 0.74 -1.5 984,163 - PS417_04425 0.78 -2.7 984,458 + -0.1 984,458 + +0.5 984,459 - -1.1 984,469 + +0.6 984,469 + -0.0 984,469 + +0.9 984,469 + -1.5 984,469 + -1.9 984,469 + +0.4 984,470 - +0.5 984,519 - -0.5 984,523 - -0.1 984,523 - -0.6 984,842 - PS417_04430 0.25 -0.1 984,900 + PS417_04430 0.30 -1.2 984,900 + PS417_04430 0.30 -1.3 984,900 + PS417_04430 0.30 -1.9 984,939 + PS417_04430 0.33 -0.2 984,940 - PS417_04430 0.33 -2.8 984,940 - +1.9 985,210 - PS417_04430 0.54 -1.2 985,381 + PS417_04430 0.67 -0.1 985,420 + PS417_04430 0.71 -0.1 985,420 + PS417_04430 0.71 -1.7 985,421 - PS417_04430 0.71 +1.8 985,504 + PS417_04430 0.77 -0.9 985,504 + PS417_04430 0.77 -0.8 985,505 - PS417_04430 0.77 -1.0 985,505 - PS417_04430 0.77 -1.5 985,506 + PS417_04430 0.77 -0.5 985,506 + PS417_04430 0.77 -1.5 985,506 + PS417_04430 0.77 -0.1 985,507 - PS417_04430 0.77 -0.9 985,507 - PS417_04430 0.77 -1.4 985,862 + PS417_04435 0.10 -1.6 985,862 + PS417_04435 0.10 -1.4 985,862 + PS417_04435 0.10 -1.5 985,863 - PS417_04435 0.10 -3.0 985,901 + PS417_04435 0.16 -2.2 985,939 + PS417_04435 0.22 -0.4 985,940 - PS417_04435 0.22 -1.9 986,099 + PS417_04435 0.47 -0.8 986,099 + PS417_04435 0.47 -1.3 986,100 - PS417_04435 0.47 -3.1 986,100 - PS417_04435 0.47 -1.5 986,100 - PS417_04435 0.47 -2.2 986,100 - PS417_04435 0.47 -1.8 986,176 + PS417_04435 0.59 -1.7 986,177 - PS417_04435 0.59 -0.9 986,177 - PS417_04435 0.59 -0.6 986,177 - PS417_04435 0.59 -0.1 986,233 - PS417_04435 0.68 -2.9 986,283 - PS417_04435 0.76 +0.9 986,315 + PS417_04435 0.81 -0.6 986,316 - PS417_04435 0.81 -1.3 986,316 - PS417_04435 0.81 -1.1 986,367 + PS417_04435 0.89 -1.8 986,368 - PS417_04435 0.89 -0.1 986,385 + -1.3 986,386 - -1.8 986,477 + -0.3 986,478 - -0.1 986,500 + +1.3 986,500 + -2.5 986,502 + -1.7 986,502 + +0.1 986,502 + -1.8 986,502 + -0.8 986,502 + -2.5 986,502 + -1.2 986,503 - -0.1 986,510 + +2.8 986,510 + -1.4 986,511 - +0.7 986,513 + -1.9 986,513 + -1.0 986,513 + +0.2 986,513 + -2.5 986,514 - +0.2 986,514 - +0.8 986,514 - +3.9 986,514 - -0.1 986,555 + -0.1 986,555 + -0.7 986,655 + -0.5
Or see this region's nucleotide sequence