Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03390 and PS417_03395 are separated by 141 nucleotides PS417_03395 and PS417_03400 are separated by 44 nucleotides PS417_03400 and PS417_03405 overlap by 11 nucleotides PS417_03405 and PS417_03410 are separated by 25 nucleotides
PS417_03390: PS417_03390 - AraC family transcriptional regulator, at 778,338 to 779,159
_03390
PS417_03395: PS417_03395 - lysine transporter LysE, at 779,301 to 779,939
_03395
PS417_03400: PS417_03400 - D-alanine--D-alanine ligase, at 779,984 to 781,078
_03400
PS417_03405: PS417_03405 - D-alanyl-alanine synthetase, at 781,068 to 781,793
_03405
PS417_03410: PS417_03410 - gamma-glutamyltransferase, at 781,819 to 783,630
_03410
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 779.041 kb on + strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.189 kb on + strand at 779.189 kb on + strand at 779.190 kb on - strand at 779.190 kb on - strand at 779.231 kb on + strand at 779.259 kb on + strand at 779.259 kb on + strand at 779.514 kb on - strand, within PS417_03395 at 779.532 kb on + strand, within PS417_03395 at 779.532 kb on + strand, within PS417_03395 at 779.533 kb on - strand, within PS417_03395 at 779.533 kb on - strand, within PS417_03395 at 779.562 kb on + strand, within PS417_03395 at 779.562 kb on + strand, within PS417_03395 at 779.563 kb on - strand, within PS417_03395 at 779.571 kb on + strand, within PS417_03395 at 779.587 kb on + strand, within PS417_03395 at 779.587 kb on + strand, within PS417_03395 at 779.902 kb on - strand at 779.960 kb on + strand at 779.961 kb on - strand at 779.961 kb on - strand at 780.000 kb on + strand at 780.007 kb on + strand at 780.472 kb on + strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.594 kb on - strand, within PS417_03400 at 780.743 kb on + strand, within PS417_03400 at 780.762 kb on - strand, within PS417_03400 at 780.966 kb on - strand, within PS417_03400 at 780.999 kb on - strand at 781.096 kb on + strand at 781.168 kb on + strand, within PS417_03405 at 781.168 kb on + strand, within PS417_03405 at 781.168 kb on + strand, within PS417_03405 at 781.405 kb on + strand, within PS417_03405 at 781.405 kb on + strand, within PS417_03405 at 781.406 kb on - strand, within PS417_03405 at 781.406 kb on - strand, within PS417_03405 at 781.494 kb on + strand, within PS417_03405 at 781.494 kb on + strand, within PS417_03405 at 781.495 kb on - strand at 781.620 kb on - strand, within PS417_03405 at 781.621 kb on + strand, within PS417_03405 at 781.621 kb on + strand at 781.621 kb on + strand, within PS417_03405 at 781.622 kb on - strand, within PS417_03405 at 781.622 kb on - strand, within PS417_03405 at 781.622 kb on - strand, within PS417_03405 at 781.622 kb on - strand, within PS417_03405 at 781.622 kb on - strand, within PS417_03405 at 781.622 kb on - strand, within PS417_03405 at 781.623 kb on + strand, within PS417_03405 at 781.624 kb on - strand, within PS417_03405 at 781.624 kb on - strand, within PS417_03405 at 781.624 kb on - strand, within PS417_03405 at 781.778 kb on + strand at 781.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 779,041 + PS417_03390 0.86 -0.9 779,041 + PS417_03390 0.86 -0.3 779,041 + PS417_03390 0.86 +0.7 779,042 - PS417_03390 0.86 -1.5 779,042 - PS417_03390 0.86 +0.1 779,042 - PS417_03390 0.86 -0.3 779,189 + +0.3 779,189 + -0.6 779,190 - +1.0 779,190 - +0.1 779,231 + -0.1 779,259 + -0.0 779,259 + +1.8 779,514 - PS417_03395 0.33 -3.2 779,532 + PS417_03395 0.36 -0.8 779,532 + PS417_03395 0.36 -2.2 779,533 - PS417_03395 0.36 -0.4 779,533 - PS417_03395 0.36 -0.8 779,562 + PS417_03395 0.41 +0.2 779,562 + PS417_03395 0.41 -0.0 779,563 - PS417_03395 0.41 -1.7 779,571 + PS417_03395 0.42 +0.2 779,587 + PS417_03395 0.45 -0.6 779,587 + PS417_03395 0.45 +0.7 779,902 - +0.8 779,960 + -0.1 779,961 - -0.0 779,961 - +0.2 780,000 + +0.5 780,007 + -0.8 780,472 + PS417_03400 0.45 +0.3 780,488 - PS417_03400 0.46 +0.3 780,488 - PS417_03400 0.46 +0.5 780,488 - PS417_03400 0.46 +2.6 780,488 - PS417_03400 0.46 -0.8 780,594 - PS417_03400 0.56 -0.0 780,743 + PS417_03400 0.69 +5.7 780,762 - PS417_03400 0.71 +3.0 780,966 - PS417_03400 0.90 +1.9 780,999 - +0.4 781,096 + +0.9 781,168 + PS417_03405 0.14 -1.0 781,168 + PS417_03405 0.14 -1.0 781,168 + PS417_03405 0.14 -0.4 781,405 + PS417_03405 0.46 -0.6 781,405 + PS417_03405 0.46 -0.0 781,406 - PS417_03405 0.47 -1.4 781,406 - PS417_03405 0.47 -0.3 781,494 + PS417_03405 0.59 -0.3 781,494 + PS417_03405 0.59 +0.1 781,495 - -0.0 781,620 - PS417_03405 0.76 -2.7 781,621 + PS417_03405 0.76 -0.6 781,621 + +0.4 781,621 + PS417_03405 0.76 +0.6 781,622 - PS417_03405 0.76 +0.4 781,622 - PS417_03405 0.76 -0.3 781,622 - PS417_03405 0.76 -0.9 781,622 - PS417_03405 0.76 -0.5 781,622 - PS417_03405 0.76 -0.4 781,622 - PS417_03405 0.76 +0.4 781,623 + PS417_03405 0.76 +2.0 781,624 - PS417_03405 0.77 -0.2 781,624 - PS417_03405 0.77 +1.9 781,624 - PS417_03405 0.77 -3.3 781,778 + -1.1 781,817 - -0.7
Or see this region's nucleotide sequence