Strain Fitness in Pseudomonas simiae WCS417 around PS417_26700

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_26690 and PS417_26695 are separated by 81 nucleotidesPS417_26695 and PS417_26700 are separated by 24 nucleotidesPS417_26700 and PS417_26705 overlap by 4 nucleotides PS417_26690: PS417_26690 - Holliday junction resolvase, at 5,769,788 to 5,770,225 _26690 PS417_26695: PS417_26695 - uracil phosphoribosyltransferase, at 5,770,307 to 5,770,813 _26695 PS417_26700: PS417_26700 - aspartate carbamoyltransferase catalytic subunit, at 5,770,838 to 5,771,842 _26700 PS417_26705: PS417_26705 - dihydroorotase, at 5,771,839 to 5,773,110 _26705 Position (kb) 5770 5771 5772Strain fitness (log2 ratio) -2 -1 0 1at 5770.213 kb on - strandat 5770.382 kb on - strand, within PS417_26695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
5,770,213 - -2.7
5,770,382 - PS417_26695 0.15 -2.5

Or see this region's nucleotide sequence