Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26580 and PS417_26585 are separated by 1 nucleotides PS417_26585 and PS417_26590 are separated by 67 nucleotides PS417_26590 and PS417_26595 overlap by 4 nucleotides PS417_26595 and PS417_26600 overlap by 7 nucleotides
PS417_26580: PS417_26580 - malonate transporter, at 5,747,698 to 5,748,462
_26580
PS417_26585: PS417_26585 - malonate carrier protein, at 5,748,464 to 5,748,868
_26585
PS417_26590: PS417_26590 - malonate decarboxylase subunit epsilon, at 5,748,936 to 5,749,835
_26590
PS417_26595: PS417_26595 - phosphoribosyl-dephospho-CoA transferase, at 5,749,832 to 5,750,419
_26595
PS417_26600: PS417_26600 - malonate decarboxylase subunit gamma, at 5,750,413 to 5,751,183
_26600
Position (kb) 5748
5749
5750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5748.018 kb on + strand, within PS417_26580 at 5748.020 kb on + strand, within PS417_26580 at 5748.020 kb on + strand, within PS417_26580 at 5748.021 kb on - strand, within PS417_26580 at 5748.021 kb on - strand, within PS417_26580 at 5748.324 kb on + strand, within PS417_26580 at 5748.462 kb on + strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.657 kb on + strand, within PS417_26585 at 5748.657 kb on + strand, within PS417_26585 at 5748.657 kb on + strand, within PS417_26585 at 5748.858 kb on + strand at 5748.862 kb on + strand at 5748.863 kb on - strand at 5748.863 kb on - strand at 5748.949 kb on - strand at 5749.097 kb on - strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.397 kb on + strand, within PS417_26590 at 5749.408 kb on + strand, within PS417_26590 at 5749.619 kb on - strand, within PS417_26590 at 5749.669 kb on - strand, within PS417_26590 at 5749.967 kb on - strand, within PS417_26595 at 5750.613 kb on - strand, within PS417_26600
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,748,018 + PS417_26580 0.42 +0.8 5,748,020 + PS417_26580 0.42 +0.5 5,748,020 + PS417_26580 0.42 +1.1 5,748,021 - PS417_26580 0.42 -0.9 5,748,021 - PS417_26580 0.42 -1.0 5,748,324 + PS417_26580 0.82 +1.1 5,748,462 + -1.9 5,748,463 - +3.1 5,748,463 - +0.2 5,748,463 - +0.2 5,748,463 - +0.5 5,748,657 + PS417_26585 0.48 -0.4 5,748,657 + PS417_26585 0.48 +0.1 5,748,657 + PS417_26585 0.48 -0.9 5,748,858 + +1.1 5,748,862 + +0.9 5,748,863 - +1.2 5,748,863 - -0.5 5,748,949 - +0.9 5,749,097 - PS417_26590 0.18 -0.3 5,749,107 + PS417_26590 0.19 -0.5 5,749,107 + PS417_26590 0.19 +0.1 5,749,397 + PS417_26590 0.51 -2.9 5,749,408 + PS417_26590 0.52 -2.1 5,749,619 - PS417_26590 0.76 -0.4 5,749,669 - PS417_26590 0.81 -0.0 5,749,967 - PS417_26595 0.23 +1.1 5,750,613 - PS417_26600 0.26 +0.7
Or see this region's nucleotide sequence