Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24555 and PS417_24560 are separated by 15 nucleotides PS417_24560 and PS417_24565 overlap by 4 nucleotides PS417_24565 and PS417_24570 are separated by 398 nucleotides
PS417_24555: PS417_24555 - polyribonucleotide nucleotidyltransferase, at 5,328,825 to 5,329,244
_24555
PS417_24560: PS417_24560 - ferrous iron transporter, at 5,329,260 to 5,330,153
_24560
PS417_24565: PS417_24565 - hypothetical protein, at 5,330,150 to 5,331,196
_24565
PS417_24570: PS417_24570 - AsnC family transcriptional regulator, at 5,331,595 to 5,332,074
_24570
Position (kb) 5330
5331
5332 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5329.260 kb on - strand at 5329.532 kb on + strand, within PS417_24560 at 5329.651 kb on + strand, within PS417_24560 at 5329.657 kb on + strand, within PS417_24560 at 5329.726 kb on - strand, within PS417_24560 at 5329.831 kb on - strand, within PS417_24560 at 5329.831 kb on - strand, within PS417_24560 at 5329.831 kb on - strand, within PS417_24560 at 5330.105 kb on - strand at 5330.151 kb on + strand at 5330.152 kb on - strand at 5330.154 kb on + strand at 5330.155 kb on - strand at 5330.235 kb on + strand at 5330.306 kb on + strand, within PS417_24565 at 5330.352 kb on + strand at 5330.415 kb on + strand, within PS417_24565 at 5330.415 kb on + strand, within PS417_24565 at 5330.415 kb on + strand, within PS417_24565 at 5330.416 kb on - strand, within PS417_24565 at 5330.416 kb on - strand, within PS417_24565 at 5330.416 kb on - strand, within PS417_24565 at 5330.416 kb on - strand, within PS417_24565 at 5330.436 kb on + strand, within PS417_24565 at 5330.436 kb on + strand, within PS417_24565 at 5330.436 kb on + strand, within PS417_24565 at 5330.442 kb on + strand, within PS417_24565 at 5330.442 kb on + strand, within PS417_24565 at 5330.442 kb on - strand, within PS417_24565 at 5330.443 kb on - strand, within PS417_24565 at 5330.445 kb on + strand, within PS417_24565 at 5330.446 kb on - strand, within PS417_24565 at 5330.511 kb on + strand, within PS417_24565 at 5330.511 kb on + strand, within PS417_24565 at 5330.550 kb on + strand, within PS417_24565 at 5330.551 kb on - strand, within PS417_24565 at 5330.551 kb on - strand, within PS417_24565 at 5330.551 kb on - strand, within PS417_24565 at 5330.595 kb on + strand, within PS417_24565 at 5330.596 kb on - strand, within PS417_24565 at 5330.596 kb on - strand, within PS417_24565 at 5330.799 kb on + strand, within PS417_24565 at 5330.800 kb on - strand, within PS417_24565 at 5330.902 kb on + strand, within PS417_24565 at 5330.903 kb on - strand, within PS417_24565 at 5331.167 kb on + strand at 5331.167 kb on + strand at 5331.200 kb on - strand at 5331.475 kb on + strand at 5331.481 kb on + strand at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.800 kb on - strand, within PS417_24570 at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.143 kb on + strand at 5332.143 kb on + strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,329,260 - -1.1 5,329,532 + PS417_24560 0.30 +0.3 5,329,651 + PS417_24560 0.44 -0.1 5,329,657 + PS417_24560 0.44 +0.5 5,329,726 - PS417_24560 0.52 +0.3 5,329,831 - PS417_24560 0.64 +2.7 5,329,831 - PS417_24560 0.64 +0.9 5,329,831 - PS417_24560 0.64 -2.1 5,330,105 - +0.9 5,330,151 + +1.1 5,330,152 - -0.4 5,330,154 + -0.1 5,330,155 - -0.1 5,330,235 + -0.3 5,330,306 + PS417_24565 0.15 -1.8 5,330,352 + +0.9 5,330,415 + PS417_24565 0.25 -0.1 5,330,415 + PS417_24565 0.25 -0.7 5,330,415 + PS417_24565 0.25 +0.1 5,330,416 - PS417_24565 0.25 -1.1 5,330,416 - PS417_24565 0.25 -0.0 5,330,416 - PS417_24565 0.25 -0.7 5,330,416 - PS417_24565 0.25 +0.3 5,330,436 + PS417_24565 0.27 -0.4 5,330,436 + PS417_24565 0.27 -0.3 5,330,436 + PS417_24565 0.27 -0.3 5,330,442 + PS417_24565 0.28 -1.4 5,330,442 + PS417_24565 0.28 +0.6 5,330,442 - PS417_24565 0.28 -1.1 5,330,443 - PS417_24565 0.28 +1.5 5,330,445 + PS417_24565 0.28 -1.7 5,330,446 - PS417_24565 0.28 -0.2 5,330,511 + PS417_24565 0.34 -1.5 5,330,511 + PS417_24565 0.34 +0.5 5,330,550 + PS417_24565 0.38 -0.6 5,330,551 - PS417_24565 0.38 +0.2 5,330,551 - PS417_24565 0.38 -0.8 5,330,551 - PS417_24565 0.38 +0.9 5,330,595 + PS417_24565 0.43 -1.1 5,330,596 - PS417_24565 0.43 +1.1 5,330,596 - PS417_24565 0.43 -0.4 5,330,799 + PS417_24565 0.62 -0.9 5,330,800 - PS417_24565 0.62 +0.2 5,330,902 + PS417_24565 0.72 -0.5 5,330,903 - PS417_24565 0.72 -1.1 5,331,167 + -4.4 5,331,167 + -1.1 5,331,200 - +0.6 5,331,475 + -1.1 5,331,481 + -0.5 5,331,739 + PS417_24570 0.30 -0.4 5,331,739 + PS417_24570 0.30 -1.9 5,331,739 + PS417_24570 0.30 -1.4 5,331,739 + PS417_24570 0.30 -0.0 5,331,740 - PS417_24570 0.30 +0.7 5,331,740 - PS417_24570 0.30 +0.1 5,331,800 - PS417_24570 0.43 -1.9 5,332,089 + -0.7 5,332,089 + -0.6 5,332,089 + +0.8 5,332,090 - -0.0 5,332,090 - +0.5 5,332,090 - -0.3 5,332,143 + -0.1 5,332,143 + +0.4 5,332,144 - +1.5 5,332,144 - +0.2 5,332,144 - -0.5 5,332,144 - -0.3
Or see this region's nucleotide sequence