Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23620 and PS417_23625 are separated by 103 nucleotides PS417_23625 and PS417_23630 are separated by 30 nucleotides PS417_23630 and PS417_23635 are separated by 120 nucleotides
PS417_23620: PS417_23620 - epimerase, at 5,108,711 to 5,109,604
_23620
PS417_23625: PS417_23625 - LysR family transcriptional regulator, at 5,109,708 to 5,110,604
_23625
PS417_23630: PS417_23630 - NADPH quinone reductase MdaB, at 5,110,635 to 5,111,225
_23630
PS417_23635: PS417_23635 - membrane protein, at 5,111,346 to 5,112,110
_23635
Position (kb) 5109
5110
5111 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5108.749 kb on + strand at 5108.750 kb on - strand at 5108.750 kb on - strand at 5108.820 kb on + strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.821 kb on - strand, within PS417_23620 at 5108.991 kb on + strand, within PS417_23620 at 5108.992 kb on - strand, within PS417_23620 at 5109.258 kb on + strand, within PS417_23620 at 5109.259 kb on - strand, within PS417_23620 at 5109.259 kb on - strand at 5109.591 kb on - strand at 5109.596 kb on + strand at 5109.597 kb on - strand at 5109.642 kb on - strand at 5109.665 kb on + strand at 5109.665 kb on + strand at 5109.666 kb on - strand at 5109.884 kb on + strand, within PS417_23625 at 5109.900 kb on - strand, within PS417_23625 at 5109.900 kb on - strand, within PS417_23625 at 5110.122 kb on - strand, within PS417_23625 at 5110.274 kb on - strand, within PS417_23625 at 5110.581 kb on + strand at 5110.581 kb on + strand at 5110.582 kb on - strand at 5110.636 kb on + strand at 5110.636 kb on + strand at 5110.783 kb on + strand, within PS417_23630 at 5110.783 kb on + strand, within PS417_23630 at 5110.783 kb on + strand, within PS417_23630 at 5110.870 kb on + strand, within PS417_23630 at 5110.870 kb on + strand, within PS417_23630 at 5110.870 kb on + strand, within PS417_23630 at 5110.870 kb on + strand, within PS417_23630 at 5110.870 kb on + strand, within PS417_23630 at 5110.871 kb on - strand, within PS417_23630 at 5110.871 kb on - strand, within PS417_23630 at 5110.903 kb on + strand, within PS417_23630 at 5110.903 kb on + strand, within PS417_23630 at 5110.984 kb on + strand, within PS417_23630 at 5111.032 kb on + strand, within PS417_23630 at 5111.032 kb on + strand, within PS417_23630 at 5111.033 kb on - strand, within PS417_23630 at 5111.083 kb on + strand, within PS417_23630 at 5111.167 kb on + strand at 5111.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,108,749 + +0.2 5,108,750 - -0.6 5,108,750 - -1.1 5,108,820 + PS417_23620 0.12 -1.4 5,108,821 - PS417_23620 0.12 -0.8 5,108,821 - PS417_23620 0.12 -1.5 5,108,821 - PS417_23620 0.12 +0.4 5,108,821 - PS417_23620 0.12 -0.6 5,108,991 + PS417_23620 0.31 -0.1 5,108,992 - PS417_23620 0.31 -1.4 5,109,258 + PS417_23620 0.61 +0.0 5,109,259 - PS417_23620 0.61 +1.0 5,109,259 - +1.0 5,109,591 - +0.3 5,109,596 + +0.2 5,109,597 - +1.8 5,109,642 - -1.0 5,109,665 + +0.0 5,109,665 + +2.0 5,109,666 - +1.4 5,109,884 + PS417_23625 0.20 +0.1 5,109,900 - PS417_23625 0.21 -1.9 5,109,900 - PS417_23625 0.21 -0.7 5,110,122 - PS417_23625 0.46 -1.4 5,110,274 - PS417_23625 0.63 -0.6 5,110,581 + +0.5 5,110,581 + +2.0 5,110,582 - -1.1 5,110,636 + -1.0 5,110,636 + +0.6 5,110,783 + PS417_23630 0.25 -1.9 5,110,783 + PS417_23630 0.25 +1.4 5,110,783 + PS417_23630 0.25 +0.2 5,110,870 + PS417_23630 0.40 -1.4 5,110,870 + PS417_23630 0.40 -0.2 5,110,870 + PS417_23630 0.40 +1.4 5,110,870 + PS417_23630 0.40 -1.5 5,110,870 + PS417_23630 0.40 -0.9 5,110,871 - PS417_23630 0.40 -0.9 5,110,871 - PS417_23630 0.40 -0.1 5,110,903 + PS417_23630 0.45 -0.4 5,110,903 + PS417_23630 0.45 -1.4 5,110,984 + PS417_23630 0.59 -0.5 5,111,032 + PS417_23630 0.67 +1.0 5,111,032 + PS417_23630 0.67 -0.7 5,111,033 - PS417_23630 0.67 +0.8 5,111,083 + PS417_23630 0.76 +0.6 5,111,167 + +0.6 5,111,309 + -1.5
Or see this region's nucleotide sequence