Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21925 and PS417_21930 are separated by 81 nucleotides PS417_21930 and PS417_21935 are separated by 88 nucleotides PS417_21935 and PS417_21940 are separated by 11 nucleotides PS417_21940 and PS417_21945 are separated by 204 nucleotides
PS417_21925: PS417_21925 - short-chain dehydrogenase, at 4,758,024 to 4,758,782
_21925
PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328
_21930
PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271
_21935
PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528
_21940
PS417_21945: PS417_21945 - RNA polymerase subunit sigma-24, at 4,760,733 to 4,761,956
_21945
Position (kb) 4759
4760
4761 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4758.446 kb on + strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.493 kb on - strand, within PS417_21925 at 4758.894 kb on - strand at 4758.940 kb on + strand, within PS417_21930 at 4758.952 kb on + strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.964 kb on + strand, within PS417_21930 at 4759.001 kb on + strand, within PS417_21930 at 4759.391 kb on - strand at 4759.554 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.959 kb on - strand, within PS417_21935 at 4760.117 kb on + strand, within PS417_21935 at 4760.323 kb on + strand at 4760.394 kb on - strand, within PS417_21940 at 4760.592 kb on + strand at 4760.722 kb on + strand at 4760.821 kb on + strand at 4760.894 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,758,446 + PS417_21925 0.56 +0.7 4,758,447 - PS417_21925 0.56 +1.2 4,758,447 - PS417_21925 0.56 +1.1 4,758,493 - PS417_21925 0.62 -0.2 4,758,894 - +0.3 4,758,940 + PS417_21930 0.16 -0.7 4,758,952 + PS417_21930 0.19 +0.4 4,758,953 - PS417_21930 0.19 -0.1 4,758,953 - PS417_21930 0.19 +2.1 4,758,953 - PS417_21930 0.19 -0.4 4,758,958 + PS417_21930 0.20 +0.6 4,758,958 + PS417_21930 0.20 +1.2 4,758,958 + PS417_21930 0.20 +3.3 4,758,958 + PS417_21930 0.20 +0.7 4,758,958 + PS417_21930 0.20 +0.4 4,758,958 + PS417_21930 0.20 -1.6 4,758,958 + PS417_21930 0.20 -0.6 4,758,958 + PS417_21930 0.20 +0.8 4,758,958 + PS417_21930 0.20 -1.3 4,758,958 + PS417_21930 0.20 -2.3 4,758,959 - PS417_21930 0.20 -0.2 4,758,959 - PS417_21930 0.20 -0.5 4,758,959 - PS417_21930 0.20 -1.0 4,758,959 - PS417_21930 0.20 +1.0 4,758,959 - PS417_21930 0.20 -0.3 4,758,959 - PS417_21930 0.20 -0.2 4,758,964 + PS417_21930 0.22 +1.2 4,759,001 + PS417_21930 0.29 +0.4 4,759,391 - -1.1 4,759,554 - PS417_21935 0.16 +0.7 4,759,721 - PS417_21935 0.36 +0.5 4,759,721 - PS417_21935 0.36 +0.5 4,759,959 - PS417_21935 0.63 +0.9 4,760,117 + PS417_21935 0.82 +0.5 4,760,323 + +0.0 4,760,394 - PS417_21940 0.45 -1.6 4,760,592 + -0.5 4,760,722 + +0.3 4,760,821 + -0.3 4,760,894 - PS417_21945 0.13 +0.9 4,761,022 - PS417_21945 0.24 -2.0 4,761,022 - PS417_21945 0.24 +0.7 4,761,022 - PS417_21945 0.24 +0.2 4,761,028 + PS417_21945 0.24 -0.7 4,761,028 + PS417_21945 0.24 +0.1
Or see this region's nucleotide sequence