Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20225 and PS417_20230 are separated by 313 nucleotides PS417_20230 and PS417_20235 are separated by 207 nucleotides PS417_20235 and PS417_20240 are separated by 65 nucleotides PS417_20240 and PS417_20245 overlap by 4 nucleotides
PS417_20225: PS417_20225 - GntR family transcriptional regulator, at 4,393,946 to 4,394,782
_20225
PS417_20230: PS417_20230 - hypothetical protein, at 4,395,096 to 4,395,284
_20230
PS417_20235: PS417_20235 - hypothetical protein, at 4,395,492 to 4,396,214
_20235
PS417_20240: PS417_20240 - hypothetical protein, at 4,396,280 to 4,397,146
_20240
PS417_20245: PS417_20245 - copper resistance protein CopD, at 4,397,143 to 4,397,997
_20245
Position (kb) 4395
4396
4397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4394.527 kb on + strand, within PS417_20225 at 4394.550 kb on - strand, within PS417_20225 at 4394.662 kb on + strand, within PS417_20225 at 4394.663 kb on - strand, within PS417_20225 at 4394.675 kb on - strand, within PS417_20225 at 4394.676 kb on + strand, within PS417_20225 at 4394.737 kb on + strand at 4394.738 kb on - strand at 4394.738 kb on - strand at 4394.764 kb on - strand at 4394.789 kb on + strand at 4395.034 kb on + strand at 4395.112 kb on + strand at 4395.113 kb on - strand at 4395.282 kb on + strand at 4395.337 kb on + strand at 4395.509 kb on - strand at 4395.762 kb on + strand, within PS417_20235 at 4395.762 kb on + strand, within PS417_20235 at 4395.762 kb on + strand, within PS417_20235 at 4395.763 kb on - strand, within PS417_20235 at 4395.763 kb on - strand at 4395.763 kb on - strand, within PS417_20235 at 4395.763 kb on - strand, within PS417_20235 at 4395.880 kb on + strand, within PS417_20235 at 4395.880 kb on + strand, within PS417_20235 at 4395.881 kb on - strand, within PS417_20235 at 4395.994 kb on - strand, within PS417_20235 at 4396.047 kb on - strand, within PS417_20235 at 4396.111 kb on - strand, within PS417_20235 at 4396.149 kb on + strand at 4396.209 kb on + strand at 4396.209 kb on + strand at 4396.210 kb on - strand at 4396.299 kb on + strand at 4396.308 kb on + strand at 4396.309 kb on - strand at 4396.309 kb on - strand at 4396.309 kb on - strand at 4396.311 kb on + strand at 4396.312 kb on - strand at 4396.366 kb on + strand at 4396.381 kb on - strand, within PS417_20240 at 4396.403 kb on + strand, within PS417_20240 at 4396.557 kb on + strand, within PS417_20240 at 4396.712 kb on + strand, within PS417_20240 at 4396.997 kb on + strand, within PS417_20240 at 4396.998 kb on - strand, within PS417_20240 at 4397.119 kb on + strand at 4397.120 kb on - strand at 4397.120 kb on - strand at 4397.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,394,527 + PS417_20225 0.69 +3.1 4,394,550 - PS417_20225 0.72 -0.3 4,394,662 + PS417_20225 0.86 -2.8 4,394,663 - PS417_20225 0.86 -0.1 4,394,675 - PS417_20225 0.87 -0.2 4,394,676 + PS417_20225 0.87 -1.1 4,394,737 + -0.5 4,394,738 - +0.4 4,394,738 - +0.9 4,394,764 - -0.7 4,394,789 + +0.2 4,395,034 + +0.8 4,395,112 + +1.0 4,395,113 - +1.4 4,395,282 + +0.0 4,395,337 + -0.1 4,395,509 - -0.2 4,395,762 + PS417_20235 0.37 -1.0 4,395,762 + PS417_20235 0.37 -1.3 4,395,762 + PS417_20235 0.37 -0.8 4,395,763 - PS417_20235 0.37 -1.1 4,395,763 - +2.6 4,395,763 - PS417_20235 0.37 -0.7 4,395,763 - PS417_20235 0.37 -1.1 4,395,880 + PS417_20235 0.54 -0.7 4,395,880 + PS417_20235 0.54 -0.1 4,395,881 - PS417_20235 0.54 +1.9 4,395,994 - PS417_20235 0.69 +0.4 4,396,047 - PS417_20235 0.77 -1.3 4,396,111 - PS417_20235 0.86 -0.6 4,396,149 + -0.7 4,396,209 + -0.0 4,396,209 + +0.7 4,396,210 - +0.3 4,396,299 + -0.5 4,396,308 + -0.4 4,396,309 - +0.9 4,396,309 - -1.0 4,396,309 - -1.1 4,396,311 + -1.0 4,396,312 - +1.1 4,396,366 + +0.4 4,396,381 - PS417_20240 0.12 +0.5 4,396,403 + PS417_20240 0.14 +1.0 4,396,557 + PS417_20240 0.32 -0.2 4,396,712 + PS417_20240 0.50 +0.7 4,396,997 + PS417_20240 0.83 +0.7 4,396,998 - PS417_20240 0.83 +0.1 4,397,119 + -0.4 4,397,120 - -0.4 4,397,120 - +3.2 4,397,120 - +1.0
Or see this region's nucleotide sequence