Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01525 and PS417_01530 are separated by 119 nucleotides PS417_01530 and PS417_01535 are separated by 141 nucleotides PS417_01535 and PS417_01540 are separated by 103 nucleotides PS417_01540 and PS417_01545 overlap by 4 nucleotides
PS417_01525: PS417_01525 - membrane protein, at 337,806 to 339,398
_01525
PS417_01530: PS417_01530 - hypothetical protein, at 339,518 to 340,075
_01530
PS417_01535: PS417_01535 - tRNA-Phe, at 340,217 to 340,292
_01535
PS417_01540: PS417_01540 - iron transporter, at 340,396 to 340,668
_01540
PS417_01545: PS417_01545 - adenine glycosylase, at 340,665 to 341,732
_01545
Position (kb) 339
340
341 Strain fitness (log2 ratio) -1
0
1
2
3 at 338.745 kb on + strand, within PS417_01525 at 338.745 kb on + strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.748 kb on + strand, within PS417_01525 at 338.748 kb on + strand, within PS417_01525 at 338.749 kb on - strand, within PS417_01525 at 338.790 kb on + strand, within PS417_01525 at 338.882 kb on - strand, within PS417_01525 at 338.882 kb on - strand, within PS417_01525 at 338.882 kb on - strand, within PS417_01525 at 339.053 kb on - strand, within PS417_01525 at 339.158 kb on + strand, within PS417_01525 at 339.193 kb on - strand, within PS417_01525 at 339.193 kb on - strand, within PS417_01525 at 339.226 kb on + strand, within PS417_01525 at 339.227 kb on - strand, within PS417_01525 at 339.231 kb on - strand, within PS417_01525 at 339.415 kb on + strand at 339.451 kb on - strand at 339.451 kb on - strand at 339.489 kb on + strand at 339.529 kb on - strand at 339.595 kb on + strand, within PS417_01530 at 339.680 kb on + strand, within PS417_01530 at 339.681 kb on - strand, within PS417_01530 at 339.845 kb on - strand, within PS417_01530 at 339.892 kb on + strand, within PS417_01530 at 339.920 kb on + strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 340.018 kb on - strand, within PS417_01530 at 340.035 kb on + strand at 340.036 kb on - strand at 340.213 kb on - strand at 340.370 kb on - strand at 340.760 kb on + strand at 340.760 kb on + strand at 340.762 kb on + strand at 340.763 kb on - strand at 340.763 kb on - strand at 340.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 338,745 + PS417_01525 0.59 -0.1 338,745 + PS417_01525 0.59 -0.4 338,746 - PS417_01525 0.59 -0.6 338,746 - PS417_01525 0.59 +0.0 338,746 - PS417_01525 0.59 -0.4 338,746 - PS417_01525 0.59 +1.0 338,748 + PS417_01525 0.59 +0.8 338,748 + PS417_01525 0.59 -1.7 338,749 - PS417_01525 0.59 -0.6 338,790 + PS417_01525 0.62 +0.2 338,882 - PS417_01525 0.68 +0.0 338,882 - PS417_01525 0.68 +0.2 338,882 - PS417_01525 0.68 +1.0 339,053 - PS417_01525 0.78 -1.6 339,158 + PS417_01525 0.85 -0.5 339,193 - PS417_01525 0.87 -0.3 339,193 - PS417_01525 0.87 -0.0 339,226 + PS417_01525 0.89 -0.2 339,227 - PS417_01525 0.89 +3.1 339,231 - PS417_01525 0.89 -1.6 339,415 + -0.6 339,451 - +0.7 339,451 - -1.2 339,489 + -0.7 339,529 - -0.5 339,595 + PS417_01530 0.14 +2.5 339,680 + PS417_01530 0.29 +1.6 339,681 - PS417_01530 0.29 +3.7 339,845 - PS417_01530 0.59 -1.0 339,892 + PS417_01530 0.67 +0.4 339,920 + PS417_01530 0.72 +0.3 339,930 - PS417_01530 0.74 +0.3 339,930 - PS417_01530 0.74 +0.1 339,930 - PS417_01530 0.74 -0.1 339,932 + PS417_01530 0.74 -0.3 339,932 + PS417_01530 0.74 +0.6 339,933 - PS417_01530 0.74 +0.0 339,933 - PS417_01530 0.74 -0.7 339,933 - PS417_01530 0.74 -0.4 340,018 - PS417_01530 0.90 +1.6 340,035 + -0.1 340,036 - -0.1 340,213 - -1.0 340,370 - +1.2 340,760 + +2.9 340,760 + -0.1 340,762 + -1.3 340,763 - -1.7 340,763 - +0.9 340,763 - -0.4
Or see this region's nucleotide sequence