Strain Fitness in Pseudomonas simiae WCS417 around PS417_07765

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_07755 and PS417_07760 are separated by 57 nucleotidesPS417_07760 and PS417_07765 are separated by 69 nucleotidesPS417_07765 and PS417_07770 are separated by 579 nucleotidesPS417_07770 and PS417_07775 are separated by 159 nucleotides PS417_07755: PS417_07755 - hypothetical protein, at 1,706,227 to 1,707,210 _07755 PS417_07760: PS417_07760 - hypothetical protein, at 1,707,268 to 1,707,798 _07760 PS417_07765: PS417_07765 - hypothetical protein, at 1,707,868 to 1,708,089 _07765 PS417_07770: PS417_07770 - hypothetical protein, at 1,708,669 to 1,708,878 _07770 PS417_07775: PS417_07775 - hypothetical protein, at 1,709,038 to 1,709,643 _07775 Position (kb) 1707 1708 1709Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1706.900 kb on + strand, within PS417_07755at 1706.900 kb on + strand, within PS417_07755at 1706.900 kb on + strand, within PS417_07755at 1706.919 kb on + strand, within PS417_07755at 1706.919 kb on + strand, within PS417_07755at 1706.919 kb on + strand, within PS417_07755at 1706.919 kb on + strand, within PS417_07755at 1706.919 kb on + strand, within PS417_07755at 1706.919 kb on + strand, within PS417_07755at 1706.920 kb on - strand, within PS417_07755at 1706.920 kb on - strand, within PS417_07755at 1706.920 kb on - strand, within PS417_07755at 1706.920 kb on - strand, within PS417_07755at 1706.923 kb on + strand, within PS417_07755at 1706.923 kb on + strand, within PS417_07755at 1706.923 kb on + strand, within PS417_07755at 1706.924 kb on - strand, within PS417_07755at 1707.043 kb on - strand, within PS417_07755at 1707.043 kb on - strand, within PS417_07755at 1707.184 kb on + strandat 1707.184 kb on + strandat 1707.190 kb on + strandat 1707.191 kb on - strandat 1707.191 kb on - strandat 1707.191 kb on - strandat 1707.191 kb on - strandat 1707.232 kb on - strandat 1707.241 kb on - strandat 1707.243 kb on + strandat 1707.243 kb on + strandat 1707.421 kb on + strand, within PS417_07760at 1707.421 kb on + strand, within PS417_07760at 1707.422 kb on - strand, within PS417_07760at 1707.422 kb on - strand, within PS417_07760at 1707.453 kb on - strand, within PS417_07760at 1707.545 kb on + strand, within PS417_07760at 1707.545 kb on + strand, within PS417_07760at 1707.546 kb on - strand, within PS417_07760at 1707.546 kb on - strand, within PS417_07760at 1707.623 kb on + strand, within PS417_07760at 1707.686 kb on - strand, within PS417_07760at 1707.689 kb on + strand, within PS417_07760at 1707.690 kb on - strand, within PS417_07760at 1707.866 kb on + strandat 1707.866 kb on + strandat 1707.915 kb on - strand, within PS417_07765at 1707.917 kb on + strand, within PS417_07765at 1707.968 kb on + strand, within PS417_07765at 1707.968 kb on + strand, within PS417_07765at 1708.057 kb on + strand, within PS417_07765at 1708.080 kb on - strandat 1708.080 kb on - strandat 1708.136 kb on - strandat 1708.173 kb on - strandat 1708.181 kb on - strandat 1708.190 kb on - strandat 1708.374 kb on + strandat 1708.416 kb on - strandat 1708.524 kb on + strandat 1708.790 kb on - strand, within PS417_07770at 1708.898 kb on + strandat 1708.898 kb on + strandat 1708.899 kb on - strandat 1708.903 kb on - strandat 1708.903 kb on - strandat 1708.911 kb on + strandat 1708.913 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
1,706,900 + PS417_07755 0.68 +0.1
1,706,900 + PS417_07755 0.68 -0.0
1,706,900 + PS417_07755 0.68 -1.1
1,706,919 + PS417_07755 0.70 +0.1
1,706,919 + PS417_07755 0.70 -2.2
1,706,919 + PS417_07755 0.70 -0.4
1,706,919 + PS417_07755 0.70 +1.7
1,706,919 + PS417_07755 0.70 +0.1
1,706,919 + PS417_07755 0.70 +0.3
1,706,920 - PS417_07755 0.70 +3.4
1,706,920 - PS417_07755 0.70 +0.4
1,706,920 - PS417_07755 0.70 -1.4
1,706,920 - PS417_07755 0.70 -0.6
1,706,923 + PS417_07755 0.71 +1.4
1,706,923 + PS417_07755 0.71 +0.2
1,706,923 + PS417_07755 0.71 +4.1
1,706,924 - PS417_07755 0.71 -1.0
1,707,043 - PS417_07755 0.83 +0.7
1,707,043 - PS417_07755 0.83 +0.4
1,707,184 + -0.7
1,707,184 + +3.2
1,707,190 + -0.1
1,707,191 - +0.3
1,707,191 - -0.7
1,707,191 - +1.5
1,707,191 - -2.2
1,707,232 - +0.2
1,707,241 - +0.9
1,707,243 + -1.1
1,707,243 + -0.2
1,707,421 + PS417_07760 0.29 -0.5
1,707,421 + PS417_07760 0.29 -0.3
1,707,422 - PS417_07760 0.29 -1.7
1,707,422 - PS417_07760 0.29 -0.5
1,707,453 - PS417_07760 0.35 +0.0
1,707,545 + PS417_07760 0.52 +0.3
1,707,545 + PS417_07760 0.52 +0.6
1,707,546 - PS417_07760 0.52 -0.7
1,707,546 - PS417_07760 0.52 -1.5
1,707,623 + PS417_07760 0.67 -0.2
1,707,686 - PS417_07760 0.79 -0.8
1,707,689 + PS417_07760 0.79 -3.0
1,707,690 - PS417_07760 0.79 +1.1
1,707,866 + -1.1
1,707,866 + -0.7
1,707,915 - PS417_07765 0.21 +0.4
1,707,917 + PS417_07765 0.22 +1.7
1,707,968 + PS417_07765 0.45 -0.2
1,707,968 + PS417_07765 0.45 +1.3
1,708,057 + PS417_07765 0.85 -0.7
1,708,080 - -1.4
1,708,080 - -1.4
1,708,136 - -1.1
1,708,173 - +0.9
1,708,181 - -0.6
1,708,190 - +0.5
1,708,374 + +0.3
1,708,416 - +1.9
1,708,524 + -0.1
1,708,790 - PS417_07770 0.58 -0.3
1,708,898 + -2.1
1,708,898 + -1.2
1,708,899 - +0.9
1,708,903 - -0.3
1,708,903 - -0.1
1,708,911 + -1.4
1,708,913 + -0.1

Or see this region's nucleotide sequence