Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05490 and PS417_05495 are separated by 55 nucleotides PS417_05495 and PS417_05500 are separated by 228 nucleotides PS417_05500 and PS417_05505 overlap by 8 nucleotides
PS417_05490: PS417_05490 - fatty acid desaturase, at 1,235,327 to 1,236,199
_05490
PS417_05495: PS417_05495 - structural protein MipA, at 1,236,255 to 1,237,025
_05495
PS417_05500: PS417_05500 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 1,237,254 to 1,237,955
_05500
PS417_05505: PS417_05505 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 1,237,948 to 1,239,342
_05505
Position (kb) 1236
1237
1238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1235.285 kb on + strand at 1235.285 kb on + strand at 1235.285 kb on + strand at 1235.511 kb on + strand, within PS417_05490 at 1235.512 kb on - strand, within PS417_05490 at 1235.512 kb on - strand, within PS417_05490 at 1235.524 kb on - strand, within PS417_05490 at 1235.577 kb on + strand, within PS417_05490 at 1235.577 kb on + strand at 1235.578 kb on - strand, within PS417_05490 at 1235.578 kb on - strand, within PS417_05490 at 1235.580 kb on + strand, within PS417_05490 at 1235.653 kb on - strand, within PS417_05490 at 1235.670 kb on + strand, within PS417_05490 at 1235.670 kb on + strand, within PS417_05490 at 1235.671 kb on - strand, within PS417_05490 at 1235.671 kb on - strand, within PS417_05490 at 1235.671 kb on - strand, within PS417_05490 at 1235.745 kb on + strand, within PS417_05490 at 1235.787 kb on + strand, within PS417_05490 at 1235.788 kb on - strand, within PS417_05490 at 1235.788 kb on - strand, within PS417_05490 at 1235.988 kb on + strand, within PS417_05490 at 1236.266 kb on + strand at 1236.269 kb on - strand at 1236.653 kb on - strand, within PS417_05495 at 1236.653 kb on - strand, within PS417_05495 at 1236.653 kb on - strand, within PS417_05495 at 1236.653 kb on - strand, within PS417_05495 at 1236.679 kb on + strand, within PS417_05495 at 1236.763 kb on + strand, within PS417_05495 at 1236.764 kb on - strand, within PS417_05495 at 1236.770 kb on + strand, within PS417_05495 at 1236.771 kb on - strand, within PS417_05495 at 1236.773 kb on - strand, within PS417_05495 at 1236.773 kb on - strand, within PS417_05495 at 1236.866 kb on - strand, within PS417_05495 at 1237.047 kb on + strand at 1237.047 kb on + strand at 1237.047 kb on + strand at 1237.111 kb on - strand at 1237.205 kb on + strand at 1237.245 kb on + strand at 1237.246 kb on - strand at 1237.452 kb on + strand, within PS417_05500 at 1237.582 kb on - strand, within PS417_05500 at 1238.008 kb on + strand at 1238.008 kb on + strand at 1238.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,235,285 + +1.4 1,235,285 + +0.1 1,235,285 + +0.7 1,235,511 + PS417_05490 0.21 -1.2 1,235,512 - PS417_05490 0.21 -0.9 1,235,512 - PS417_05490 0.21 -0.7 1,235,524 - PS417_05490 0.23 -0.5 1,235,577 + PS417_05490 0.29 -0.3 1,235,577 + +1.9 1,235,578 - PS417_05490 0.29 -1.7 1,235,578 - PS417_05490 0.29 -0.5 1,235,580 + PS417_05490 0.29 +1.3 1,235,653 - PS417_05490 0.37 -1.7 1,235,670 + PS417_05490 0.39 -0.9 1,235,670 + PS417_05490 0.39 -0.2 1,235,671 - PS417_05490 0.39 +0.9 1,235,671 - PS417_05490 0.39 +1.6 1,235,671 - PS417_05490 0.39 -2.7 1,235,745 + PS417_05490 0.48 -0.3 1,235,787 + PS417_05490 0.53 -0.0 1,235,788 - PS417_05490 0.53 -0.2 1,235,788 - PS417_05490 0.53 -1.7 1,235,988 + PS417_05490 0.76 +0.1 1,236,266 + +0.6 1,236,269 - -1.3 1,236,653 - PS417_05495 0.52 -1.2 1,236,653 - PS417_05495 0.52 -2.0 1,236,653 - PS417_05495 0.52 -0.6 1,236,653 - PS417_05495 0.52 +0.0 1,236,679 + PS417_05495 0.55 -0.2 1,236,763 + PS417_05495 0.66 -2.2 1,236,764 - PS417_05495 0.66 -2.2 1,236,770 + PS417_05495 0.67 +0.2 1,236,771 - PS417_05495 0.67 +0.3 1,236,773 - PS417_05495 0.67 -1.1 1,236,773 - PS417_05495 0.67 +0.8 1,236,866 - PS417_05495 0.79 -2.1 1,237,047 + +0.1 1,237,047 + -0.7 1,237,047 + -0.9 1,237,111 - -1.0 1,237,205 + -3.1 1,237,245 + -0.1 1,237,246 - +0.9 1,237,452 + PS417_05500 0.28 -1.0 1,237,582 - PS417_05500 0.47 -0.8 1,238,008 + -1.4 1,238,008 + +0.3 1,238,009 - -1.4
Or see this region's nucleotide sequence