Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05465 and PS417_05470 are separated by 55 nucleotides PS417_05470 and PS417_05475 are separated by 82 nucleotides PS417_05475 and PS417_05480 overlap by 4 nucleotides PS417_05480 and PS417_05485 overlap by 4 nucleotides PS417_05485 and PS417_05490 are separated by 80 nucleotides
PS417_05465: PS417_05465 - alpha/beta hydrolase, at 1,231,737 to 1,232,756
_05465
PS417_05470: PS417_05470 - DSBA oxidoreductase, at 1,232,812 to 1,233,465
_05470
PS417_05475: PS417_05475 - arginase, at 1,233,548 to 1,234,468
_05475
PS417_05480: PS417_05480 - transporter, at 1,234,465 to 1,234,845
_05480
PS417_05485: PS417_05485 - transporter, at 1,234,842 to 1,235,246
_05485
PS417_05490: PS417_05490 - fatty acid desaturase, at 1,235,327 to 1,236,199
_05490
Position (kb) 1233
1234
1235 Strain fitness (log2 ratio) -2
-1
0
1 at 1232.591 kb on + strand, within PS417_05465 at 1232.682 kb on + strand at 1232.765 kb on + strand at 1232.765 kb on + strand at 1232.766 kb on - strand at 1232.766 kb on - strand at 1233.109 kb on + strand, within PS417_05470 at 1233.110 kb on - strand, within PS417_05470 at 1233.110 kb on - strand, within PS417_05470 at 1233.166 kb on + strand, within PS417_05470 at 1233.166 kb on + strand, within PS417_05470 at 1233.167 kb on - strand, within PS417_05470 at 1233.167 kb on - strand, within PS417_05470 at 1233.305 kb on - strand, within PS417_05470 at 1233.553 kb on + strand at 1233.767 kb on + strand, within PS417_05475 at 1234.195 kb on - strand, within PS417_05475 at 1234.308 kb on + strand, within PS417_05475 at 1234.308 kb on + strand, within PS417_05475 at 1234.309 kb on - strand, within PS417_05475 at 1234.309 kb on - strand, within PS417_05475 at 1235.285 kb on + strand at 1235.285 kb on + strand at 1235.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,232,591 + PS417_05465 0.84 +0.4 1,232,682 + -1.1 1,232,765 + -1.7 1,232,765 + +0.8 1,232,766 - -0.7 1,232,766 - +0.3 1,233,109 + PS417_05470 0.45 -0.3 1,233,110 - PS417_05470 0.46 +1.5 1,233,110 - PS417_05470 0.46 +1.1 1,233,166 + PS417_05470 0.54 -0.3 1,233,166 + PS417_05470 0.54 +0.0 1,233,167 - PS417_05470 0.54 +1.7 1,233,167 - PS417_05470 0.54 +0.9 1,233,305 - PS417_05470 0.75 -2.2 1,233,553 + -1.1 1,233,767 + PS417_05475 0.24 -1.7 1,234,195 - PS417_05475 0.70 -1.9 1,234,308 + PS417_05475 0.83 -0.6 1,234,308 + PS417_05475 0.83 +0.5 1,234,309 - PS417_05475 0.83 -1.7 1,234,309 - PS417_05475 0.83 -0.7 1,235,285 + +1.4 1,235,285 + +0.1 1,235,285 + +0.7
Or see this region's nucleotide sequence