Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04095 and PS417_04100 overlap by 8 nucleotides PS417_04100 and PS417_04105 are separated by 111 nucleotides
PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131
_04095
PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684
_04100
PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520
_04105
Position (kb) 922
923 Strain fitness (log2 ratio) -2
-1
0
1
2 at 921.184 kb on + strand, within PS417_04095 at 921.268 kb on + strand, within PS417_04095 at 922.749 kb on - strand at 922.749 kb on - strand at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.147 kb on + strand, within PS417_04105 at 923.148 kb on - strand, within PS417_04105 at 923.177 kb on + strand, within PS417_04105 at 923.178 kb on - strand, within PS417_04105 at 923.202 kb on - strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.243 kb on - strand, within PS417_04105 at 923.274 kb on + strand, within PS417_04105 at 923.275 kb on - strand at 923.275 kb on - strand, within PS417_04105 at 923.275 kb on - strand, within PS417_04105 at 923.362 kb on + strand, within PS417_04105 at 923.362 kb on + strand, within PS417_04105 at 923.363 kb on - strand at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.525 kb on - strand, within PS417_04105 at 923.535 kb on - strand, within PS417_04105 at 923.594 kb on - strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 921,184 + PS417_04095 0.25 +1.1 921,268 + PS417_04095 0.32 +0.1 922,749 - +1.1 922,749 - +1.8 922,982 + PS417_04105 0.11 -0.5 922,982 + PS417_04105 0.11 -1.3 922,982 + PS417_04105 0.11 -1.5 922,983 - PS417_04105 0.11 -1.3 922,983 - PS417_04105 0.11 +0.1 922,983 - PS417_04105 0.11 +1.1 923,096 + PS417_04105 0.17 -2.2 923,096 + PS417_04105 0.17 -0.3 923,147 + PS417_04105 0.20 -0.9 923,148 - PS417_04105 0.20 -0.7 923,177 + PS417_04105 0.22 +0.8 923,178 - PS417_04105 0.22 -1.8 923,202 - PS417_04105 0.24 -0.8 923,242 + PS417_04105 0.26 -1.1 923,242 + PS417_04105 0.26 +0.1 923,242 + PS417_04105 0.26 -1.6 923,243 - PS417_04105 0.26 -0.9 923,274 + PS417_04105 0.28 -2.4 923,275 - +0.1 923,275 - PS417_04105 0.28 +0.2 923,275 - PS417_04105 0.28 -1.9 923,362 + PS417_04105 0.33 -1.1 923,362 + PS417_04105 0.33 -1.8 923,363 - +0.1 923,373 - PS417_04105 0.33 -2.2 923,373 - PS417_04105 0.33 +0.1 923,373 - PS417_04105 0.33 -0.9 923,373 - PS417_04105 0.33 -1.0 923,525 - PS417_04105 0.42 +0.3 923,535 - PS417_04105 0.43 +0.1 923,594 - PS417_04105 0.46 -0.5 923,597 + PS417_04105 0.46 -1.5 923,597 + PS417_04105 0.46 -1.9 923,597 + PS417_04105 0.46 -2.5 923,598 - PS417_04105 0.46 -0.5 923,598 - PS417_04105 0.46 +0.1 923,598 - PS417_04105 0.46 +0.3 923,598 - PS417_04105 0.46 -1.2
Or see this region's nucleotide sequence