Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03025 and PS417_03030 are separated by 151 nucleotides PS417_03030 and PS417_03035 overlap by 8 nucleotides PS417_03035 and PS417_03040 are separated by 24 nucleotides
PS417_03025: PS417_03025 - penicillin-binding protein 1C, at 695,900 to 698,191
_03025
PS417_03030: PS417_03030 - pyrophosphatase, at 698,343 to 698,651
_03030
PS417_03035: PS417_03035 - SAM-dependent methyltransferase, at 698,644 to 699,393
_03035
PS417_03040: PS417_03040 - hypothetical protein, at 699,418 to 700,020
_03040
Position (kb) 698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 698.394 kb on - strand, within PS417_03030 at 698.556 kb on + strand, within PS417_03030 at 698.556 kb on + strand, within PS417_03030 at 698.556 kb on + strand, within PS417_03030 at 698.557 kb on - strand, within PS417_03030 at 698.805 kb on + strand, within PS417_03035 at 698.805 kb on + strand, within PS417_03035 at 698.805 kb on + strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.919 kb on + strand, within PS417_03035 at 698.920 kb on - strand, within PS417_03035 at 698.965 kb on + strand, within PS417_03035 at 699.168 kb on + strand, within PS417_03035 at 699.169 kb on - strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.365 kb on - strand at 699.368 kb on + strand at 699.392 kb on - strand at 699.571 kb on + strand, within PS417_03040 at 699.572 kb on - strand, within PS417_03040 at 699.585 kb on + strand, within PS417_03040 at 699.586 kb on - strand, within PS417_03040
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 698,394 - PS417_03030 0.17 -0.0 698,556 + PS417_03030 0.69 -0.8 698,556 + PS417_03030 0.69 -1.1 698,556 + PS417_03030 0.69 -0.5 698,557 - PS417_03030 0.69 -1.1 698,805 + PS417_03035 0.21 +0.2 698,805 + PS417_03035 0.21 -0.9 698,805 + PS417_03035 0.21 -0.1 698,806 - PS417_03035 0.22 +0.1 698,806 - PS417_03035 0.22 +1.1 698,806 - PS417_03035 0.22 -0.1 698,806 - PS417_03035 0.22 +0.4 698,806 - PS417_03035 0.22 -0.5 698,806 - PS417_03035 0.22 +0.4 698,919 + PS417_03035 0.37 +0.9 698,920 - PS417_03035 0.37 +0.7 698,965 + PS417_03035 0.43 +0.3 699,168 + PS417_03035 0.70 -0.8 699,169 - PS417_03035 0.70 +0.1 699,265 + PS417_03035 0.83 -1.0 699,265 + PS417_03035 0.83 +1.1 699,265 + PS417_03035 0.83 +0.8 699,265 + PS417_03035 0.83 +0.7 699,265 + PS417_03035 0.83 -0.9 699,266 - PS417_03035 0.83 -0.5 699,266 - PS417_03035 0.83 +0.1 699,266 - PS417_03035 0.83 -0.0 699,266 - PS417_03035 0.83 +1.1 699,267 + PS417_03035 0.83 +0.7 699,267 + PS417_03035 0.83 -0.2 699,267 + PS417_03035 0.83 -1.1 699,267 + PS417_03035 0.83 -0.4 699,268 - PS417_03035 0.83 +0.4 699,268 - PS417_03035 0.83 -0.5 699,268 - PS417_03035 0.83 +0.1 699,268 - PS417_03035 0.83 -0.3 699,365 - +0.1 699,368 + +1.0 699,392 - -0.3 699,571 + PS417_03040 0.25 -0.2 699,572 - PS417_03040 0.26 -3.2 699,585 + PS417_03040 0.28 -0.2 699,586 - PS417_03040 0.28 -1.0
Or see this region's nucleotide sequence